KEGG   Cinclus cinclus (white-throated dipper): 134057092
Entry
134057092         CDS       T10813                                 
Name
(RefSeq) lymphotoxin-alpha-like
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
ccic  Cinclus cinclus (white-throated dipper)
Pathway
ccic04010  MAPK signaling pathway
ccic04060  Cytokine-cytokine receptor interaction
ccic04150  mTOR signaling pathway
ccic04210  Apoptosis
ccic04217  Necroptosis
ccic04350  TGF-beta signaling pathway
ccic04620  Toll-like receptor signaling pathway
ccic04621  NOD-like receptor signaling pathway
ccic04622  RIG-I-like receptor signaling pathway
ccic04625  C-type lectin receptor signaling pathway
ccic04920  Adipocytokine signaling pathway
ccic05132  Salmonella infection
ccic05164  Influenza A
ccic05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ccic00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    134057092
   04350 TGF-beta signaling pathway
    134057092
   04150 mTOR signaling pathway
    134057092
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    134057092
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    134057092
   04217 Necroptosis
    134057092
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    134057092
   04621 NOD-like receptor signaling pathway
    134057092
   04622 RIG-I-like receptor signaling pathway
    134057092
   04625 C-type lectin receptor signaling pathway
    134057092
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    134057092
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    134057092
   05168 Herpes simplex virus 1 infection
    134057092
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    134057092
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:ccic04052]
    134057092
   00536 Glycosaminoglycan binding proteins [BR:ccic00536]
    134057092
Cytokines and neuropeptides [BR:ccic04052]
 Cytokines
  Tumor necrosis fators
   134057092
Glycosaminoglycan binding proteins [BR:ccic00536]
 Heparan sulfate / Heparin
  Cytokines
   134057092
SSDB
Motif
Pfam: TNF
Other DBs
NCBI-GeneID: 134057092
NCBI-ProteinID: XP_062370103
LinkDB
Position
Unknown
AA seq 214 aa
MAEPPPRPPLRPHVPKVGVTALVLVLLLLSPRAGAATRLPPPDPPETPTPAVPGLPPELP
RVTRGDKPAAHVVASSWPSPRGSLVWEADVAPALVRNGVRLRGNRLVVPRDGLYFVYAAA
AFQGSRCPRRSPRRPLRLAVSRLSPEYPRDVPLLRAARSVCGGGARPGLWVESLYQGAVF
QLRRGDQLAATTSAGRFLDLHGAGQAYFGVLGVD
NT seq 645 nt   +upstreamnt  +downstreamnt
atggccgagccccccccgcgtccccccctgcgcccgcacgtccccaaggtcggtgtcacc
gcgctcgtcctcgtcctgctgctgctgtcaccgagggctggcgctgccacccgcctgccc
cccccggaccccccagagaccccaaccccggccgtcccagggctcccccccgagctgccg
cgggtcaccaggggagacaaaccagctgctcacgtcgtggcctcctcctggccgtccccc
cgaggctccctggtgtgggaagcagacgtggcccccgccctggtacggaacggggtgcgg
ctccgggggaaccgcctggtggtccctcgggacgggctctacttcgtttacgccgccgcc
gccttccagggctcccgctgcccccggcgctccccccggcgccccctgcgcctggcagtg
tcccggttgtcccccgagtacccccgggacgtgcccctgctgcgcgccgcccgctccgtg
tgcggcggaggggcccggccggggctctgggtggagtccctgtaccagggagccgtgttc
cagctgcgccgcggggaccagctggcggccaccacctcggcggggaggttcctggacctg
cacggggctgggcaggcgtattttggggtgctgggggtggattag

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