Cephus cinctus (wheat stem sawfly): 107270778
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Entry
107270778 CDS
T07523
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ccin
Cephus cinctus (wheat stem sawfly)
Pathway
ccin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ccin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107270778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ccin03041
]
107270778
Spliceosome [BR:
ccin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
107270778
Complex C
U5 SnRNP specific factors
107270778
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Ras
ABC_tran
Motif
Other DBs
NCBI-GeneID:
107270778
NCBI-ProteinID:
XP_015601589
UniProt:
A0AAJ7C492
LinkDB
All DBs
Position
Unknown
AA seq
979 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASESEDENEYRNAGEDGEDRDRSDEEMEEDKDESRDHPEQANM
TVVLHEDKRYYPSALEVYGPDVETLVQEEDAQPLDKPLIAATRKPKFQIKQQQLPDTTYS
IEFLSDMMDAPHLIRNIVLLGHLHHGKTTLVDCLVRQTHPYMHSVTDEKPLRYTDTLFTE
QQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAGIRMSDGAVLIVDAAEG
VMLNTERLLKHALQERLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLIALYSD
SENPSFVSPALGNVCFASSEYNVCFTLKSFAALYARNHPTLNATEFAKRLWGDVYFNSKT
RKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMNIR
PLLRLVCTRFLGDMCGLVDMCVAHVPSPLVHAPVKVQHVYTGPVDSPLAQDMINCDPDGR
LMIHSTKMYPTEDCTLFVVLGRVMSGTLEANQRVRVLGEAYSRADEEDSRILTVGRLWIS
EARYSIELNRVPAGNWVLIEGIDRPIVKTSTITDLIASDDLHIFRPLKFNTQSVIKIAVE
PVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEIDI
KVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNKKR
LGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQWG
TREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLF
VEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQG
QAFCLSVFHHWQIVPGDPLDKSIAIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINKFF
DDPMLLELARQDVLLNYPL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagatttatacgatgaatttgggaattatattggaccagacttagcttctgaa
agtgaagatgaaaatgagtataggaatgcaggagaggatggtgaagatcgagatcgctca
gatgaagaaatggaggaggataaggatgagtctcgagaccatcccgaacaagccaatatg
actgttgtcttgcatgaggacaaacgatattatccaagtgcattggaggtctatggtcct
gatgttgagactctcgtccaagaggaagatgcccagcctttggataaacctctgattgct
gcaacgaggaaaccaaaatttcagataaaacagcagcaacttccagatacaacatacagc
attgaatttttgtccgatatgatggacgctccacatttaattcgaaacattgtgcttctt
ggccaccttcatcatggaaaaacgacactcgtagattgccttgtccggcaaacacatcct
tacatgcatagtgtcacagatgagaaacctctcagatatacagacactttattcacagag
caacaacgaggcgtatctacgaaagcaaccccagttacactacttttgcaagatgtgaaa
tctaaatcgtacttactaaatatattcgacactccaggacacgtgaacttttctgatgaa
gctacggctggcatccgaatgtctgatggtgcagtcttgatagtggatgctgctgaaggt
gtgatgctaaacactgaaagattactaaaacacgccttacaggaaaggctcgctttaaca
gtgtgcattaacaagatagatcgacttgttctcgaactaaaactaccacctctggatgca
tactataagttgagacacattattgaagaaattaatggcctcattgctttgtactcagac
tcagaaaatccatcatttgtctcacctgccttgggaaacgtatgttttgctagctctgag
tacaatgtttgttttacattaaaatcatttgccgcactttatgcccgaaatcacccaaca
ctcaatgctactgaatttgcaaagaggttatggggtgatgtatattttaattcaaaaaca
cgaaagtttacaaagaaacctccgcacaatacagctcaacgtagttttatcgaatttata
ttggaaccgctatacaagatattcgctcaggtcgttggagatgttgacactactttaccg
gatgttcttgacgagcttggaatccggctaacctctgaagagatgaaaatgaatatcaga
ccactattgagattggtttgcactagatttcttggagatatgtgtggattggttgatatg
tgtgtcgctcatgttccgagtccactggtccatgcacctgttaaagttcaacatgtttac
actgggcctgtagattcgccattggctcaagatatgatcaactgtgatccagatgggcgg
ttaatgattcatagtacgaaaatgtatccgaccgaggattgtacgctcttcgtagtccta
gggagagtgatgtctggtactttggaagctaatcaacgtgtccgagttcttggtgaagcg
tattccagagcagacgaagaagattctcggatcctcacagtgggacggctttggatcagt
gaagcccgatattctatagaattgaatcgcgtgccagccggtaactgggtccttatagaa
ggtattgatagacccatagtaaagaccagtactataacggatctgattgcgtccgacgat
ctccatatatttcgaccactgaaattcaacactcagagtgttattaagattgcagtggaa
ccagtgaatccttcggaattaccaaaaatgctggatggtctacgaaaagtgaataaaagt
tatccgttgttaggaacaagagtagaggagagcggggagcatgtggttctcggtactggt
gaactttatttggattgcgcaatgcacgatttgagaagaatgtattccgaaattgatatc
aaagtagctgatcctgtggtggcattcgctgagactgttgtcgaaacaagttcattaaaa
tgttttgcggagacaccgaataaacgcaataaacttacaatgatagctgaaccattggaa
agaggtcttgccgaagatatcgaagctgaacatgtgcggataacatggaacaagaagagg
ttaggtgaatttttccaaacgaagtacgattgggatttattggcggcgagaagtatatgg
gcatttggacccgattcgacaggaccgaatattctcgtagatgatactttaccttcggag
gtggacaaaacgttattgaatagtgctcgagatgcaattattcaaggatttcagtggggt
acacgagaaggtcctttatgcgaagaacctattcgcaacgtcaaatttaaaatacttgac
gctgtgattgctcaggaacctcttcatcgtggaggagggcagattattccaaccgcaaga
agagttgcatattctgcttttttaatggcaacgccacgattaatggaaccctatctcttt
gttgaagtccaagcaccagcagactgtgtttctgcagtgtacaccgtactagcaaaacga
agagggcatgtaacgcaagatgcaccagttccaggtagtccgctttacaccataaaggct
tttattccggccattgacagtttcggttttgaaacggacttgagaacacatactcaagga
caagcattctgtctctccgtttttcatcattggcaaattgtaccgggtgaccctcttgat
aaaagtattgccatacggccgcttgaacctcaacctgccacgcatttggctagagaattt
atgctgaagactaggcggcgcaaaggactatccgaggatgtttccatcaataaatttttt
gatgatcctatgcttctagaacttgctagacaagatgtacttttaaattatcctctgtag
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