Curtobacterium citreum: QPK07_04710
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Entry
QPK07_04710 CDS
T09163
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccit
Curtobacterium citreum
Pathway
ccit03030
DNA replication
ccit03410
Base excision repair
ccit03420
Nucleotide excision repair
ccit03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QPK07_04710 (ligA)
03410 Base excision repair
QPK07_04710 (ligA)
03420 Nucleotide excision repair
QPK07_04710 (ligA)
03430 Mismatch repair
QPK07_04710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccit03032
]
QPK07_04710 (ligA)
03400 DNA repair and recombination proteins [BR:
ccit03400
]
QPK07_04710 (ligA)
Enzymes [BR:
ccit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QPK07_04710 (ligA)
DNA replication proteins [BR:
ccit03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QPK07_04710 (ligA)
DNA repair and recombination proteins [BR:
ccit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QPK07_04710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QPK07_04710 (ligA)
MMR (mismatch excision repair)
DNA ligase
QPK07_04710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QPK07_04710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WIJ46272
LinkDB
All DBs
Position
969625..971991
Genome browser
AA seq
788 aa
AA seq
DB search
MSETDATFETIDPDDLDAAQAQREVDRLRVRINELRDQYYEGNGSTVSDGEYDGLVHRLD
AVEQRFPDLLTPDSPTQTVGGQAQTVQFAPVEHAERMLSLDNVFSPDELTDWAVKVQRDA
GAERVRFLTELKIDGLAVNLRYEHGRLVSAATRGDGVVGEDVTGNVRTMGTIPDRLAGTG
HPPLVEVRGEIFFPVEQFDELNARQRDAGERVFANPRNAAAGSLRQKEEGKSEAKRALMV
DRLQRLRMLVHGIGAWPVRELESETDVHAQSEVYELLQTWGLPTSTHYRVFDTIDEVQAF
VRDYGDRRSSVEHQIDGIVIKVDDLALHEELGSTSRAPRWAIAYKYPPEEVHTKLLDVVV
SVGRTGRATPFAVMEPAEVAGSVVRQATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEVLG
PVVELRDGSEREFVMPENCPECGTPLRPAKEGDKDLRCPNARSCPAQVRGRVEHIASRGS
LDIEGLGEVAAAALTQPLHPETPPLVTEAGLFDLTMEDIVGIEVIVRDAETGMEKTDEDG
TPKRVTPFSRARKKTDPPFDPDARGADHTGAPSRYPSKNAFEMLANIDAAKTRPLWRILV
GLSIRHVGPVAARALANHFGSLDRIREASREDLAAVDGVGGIIADALIDWFAVDWHREII
DRWTAAGVQFTTPDHPGPGAAVEGGVLTGLTVVATGSLEGYTREGAQEAIIAAGGKAASS
VSKKTDYVAAGPGAGSKLTKAEQLGVRIIDAEQFRLLVTEGPDAIAPEPEPEGETAEPEA
AAPDTAAD
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaccgacgccacgttcgagaccatcgacccggacgacctcgacgcggcccag
gcccagcgcgaggtcgaccggctgcgcgtgcgcatcaacgagctgcgcgaccagtactac
gagggcaacggctcgacggtctccgacggcgagtacgacgggctcgtgcaccgcctcgac
gccgtcgagcagcggttcccggacctgctcacgccggacagcccgacgcagaccgtcggc
ggccaggcgcagaccgtgcagttcgcgccggtcgagcacgccgagcggatgctgagcctg
gacaacgtgttcagccccgacgagctgaccgactgggccgtcaaggtgcagcgggacgcc
ggcgccgagcgcgtgcggttcctcaccgagctgaagatcgacgggctcgccgtcaacctg
cggtacgagcacggacggctggtctcggcggcgacccgcggcgacggcgtggtcggcgag
gacgtcaccgggaacgtgcggacgatgggcacgatcccggaccggctcgccggcaccggg
cacccgcccctggtcgaggtgcggggcgagatcttcttcccggtcgagcagttcgacgag
ctgaacgcccggcagcgcgacgcgggggagcgcgtcttcgcgaacccgcggaacgccgcg
gcggggtccctccggcagaaggaggagggcaagtccgaggcgaagcgggcgctcatggtg
gaccgcctgcagcgcctgcggatgctcgtgcacgggatcggtgcgtggccggtgcgggag
ctcgagtccgagaccgacgtgcacgcccagtccgaggtgtacgagctgctgcagacgtgg
ggtctgccgacgagcacgcactaccgggtgttcgacaccatcgacgaggtgcaggcgttc
gtccgtgactacggcgaccgccggtcctcggtggagcaccagatcgacggcatcgtgatc
aaggtcgacgacctggccctgcacgaggagctcgggtcgacctcgcgggcgccacggtgg
gcgatcgcctacaagtacccgccggaagaggtccacacgaagctcctcgacgtggtcgtc
agcgtcgggcgcaccggccgggccaccccgttcgccgtcatggaaccggccgaggtcgcc
gggtcggtcgtgcgccaggcgaccctgcacaaccaggacgtcgtcaaggccaagggcgtg
ctcatcggcgacacggtcgtgctccggaaggccggcgacgtcatccccgaggtcctcggc
ccggtggtcgagctccgcgacggcagcgagcgcgagttcgtgatgcccgagaactgcccg
gagtgcggcacgccgctccgcccggcgaaggagggcgacaaggacctgcgctgcccgaac
gcccgcagctgcccggcgcaggtgcgcggtcgtgtcgagcacatcgcgtcccgcggttcg
ctcgacatcgagggcctcggcgaggtcgccgccgccgccctgacccagccgctccacccc
gagacgccgccgctcgtgaccgaggccggactgttcgacctgacgatggaggacatcgtc
gggatcgaggtcatcgtccgcgacgccgagaccggcatggagaagaccgacgaggacggc
accccgaagcgtgtgacgccgttcagccgggcgcgcaagaagaccgacccgccgttcgac
cccgacgcccgcggcgcggaccacaccggcgcgccgagccggtacccgtcgaagaacgcg
ttcgagatgctcgcgaacatcgacgccgcgaagacgaggccgctctggcgcatcctggtc
ggcctgagcatccggcacgtcggaccggtcgccgcccgggccctcgcgaaccacttcggc
tcgctcgaccggatccgcgaggcctctcgcgaggacctcgcggcggtggacggcgtcggt
gggatcatcgcggacgccctgatcgactggttcgccgtcgactggcaccgcgagatcatc
gaccgctggacggccgccggcgtgcagttcaccacgcccgaccacccggggcccggtgcc
gcggtggagggcggcgtgctgaccggcctgacggtcgtcgcgacggggtccctcgagggg
tacacccgcgaaggcgcgcaggaggcgatcatcgccgcgggcggcaaggctgcgtcgagc
gtcagcaagaagaccgactacgtcgccgccggccccggagccgggtcgaagctcacgaag
gccgagcagctcggcgtccggatcatcgacgcggagcagttccggctgctcgtcaccgag
gggccggacgcgatcgcgccggaacccgagccggaaggcgagaccgccgagcccgaggcc
gccgcgccggacaccgccgcggactga
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