Corticium candelabrum: 134188184
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Entry
134188184 CDS
T11492
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cclm Corticium candelabrum
Pathway
cclm03018
RNA degradation
cclm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134188184
09123 Folding, sorting and degradation
03018 RNA degradation
134188184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclm03019
]
134188184
03041 Spliceosome [BR:
cclm03041
]
134188184
Messenger RNA biogenesis [BR:
cclm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134188184
mRNA degradation factors
5'-3' decay
Lsm complex
134188184
Spliceosome [BR:
cclm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
134188184
Complex C
U2 snRNP components
134188184
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF8043
RimP_C
Lipoprotein_22
TIG_SUH
LNS2
vATP-synt_E
OB_cyt-4
Motif
Other DBs
NCBI-GeneID:
134188184
NCBI-ProteinID:
XP_062512370
LinkDB
All DBs
Position
12:complement(45508..46239)
Genome browser
AA seq
99 aa
AA seq
DB search
MADDTSSGAVEEPLDLIRLSLDERIYVKMKNDRELRGRLHAYDQHLNMVLGDVEETITTV
EVDDETYEEIYKTSKRNVQMLFVRGDGVILVSPPLRVGI
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgatacgtcgtctggtgctgttgaagagcctctcgatcttattcgtcttagc
ttggatgaaaggatatatgtcaaaatgaagaatgacagagagctacgtggtcgcttgcac
gcgtatgatcaacacttgaacatggttctgggagatgtggaagaaacaatcactacagta
gaagtggacgatgaaacatacgaagaaatttacaaaacaagcaagcgtaatgttcagatg
ctgtttgtacgtggggacggtgttattttggtgtcaccgcctctcagagttggcatctag
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