Coregonus clupeaformis (lake whitefish): 121531951
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Entry
121531951 CDS
T08357
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X1
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121531951
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
121531951
04261 Adrenergic signaling in cardiomyocytes
121531951
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121531951
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121531951
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
VWA_3
VWA_2
dCache_1
Cache_3-Cache_2
DUF2201
dCache_2
Motif
Other DBs
NCBI-GeneID:
121531951
NCBI-ProteinID:
XP_041693474
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Position
19:43869332..43975465
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AA seq
1122 aa
AA seq
DB search
MNVRAGVWTGSWRLAMDTYRPHSVFILLLLSSDICLPSQFPTQLIIKEWVDQMQIELVTL
ADMASAGKSLTQIFLDNQNLYTVESNDAEELVARAARNIEQLLLKRAAALETLATAAENF
QMEHQWKDEYADGDIVYYNAKDNLEVNETEGRKNRIRPAFKEDMLFKRLTSHNHTAVHIP
TDIYDGSTIVLNELNWTEALEDVFKKNREDDPTLLWQVFGSATGLARYYPASPWMDARKT
PSKIDLYDVRRRPWYIQGAASPKDMLILVDASGSVSGLTLKLIRTSVGEMLETLSDDDYV
NVVYFNTRVNNTACFDHLVQANVRNKKILKDAVQNISAKGITNYTKGFEFAFEQLYATNI
TRANCNKIIMLFTDGGEERASAILQKYNADKKVRIFTFSVGQHNYDKGPVQWMACANKGY
FYEIPSIGAIRINTQEYLDVLGRPMVLADQLAKQVQWTNVYLDALELGLVITGTLPVFNK
TKYKDDLGIEIQNQLILGVMGIDVSLDDIKKLTPRFTIGPNGYYFAIDPNGYVLLHPNLQ
PKKRIRNRKTRLNKPYAITFHENPKFQEPVTLDFLDAELENDIKVQIRRMMIDGNPGEET
IDTLVKTQDERYIDRGVRTYTWAQVNGTDYSLALVLPTYSEHYIQAKLGDTIRQAMAPWG
QKAMDTLQVEMFDELGYTFIAPREYCKGLKDNDNNTQFLLDFNQFIDRNTLEEPCNVTLV
SRLLLDAGLTADLVKLWKEQTLGGILARFVATDGGITRVYPRSAGEEWTENAETYDSSFY
KRTLDNDIYIFTAPYFNKSRESGYESGILVSKAVDLNIDGVNLKPAVVGVKLNVSAWMNS
FMNATIKVNCKDEICGCLKNDKHVDCVILDDGGFLLMSNQDEYITQIGQFFGEVDPVVMI
SLVNTSLYSFNKTYDYQSVCDPERDSKAAAGPRSVYVPTVADMLSIGWWASTAAWSIIQQ
LFYGLIFPNFLEAADSDEDMSANMFKESCITEQTQYFFDNEERSYSGVLDCGNCSRMYRA
EKLPKTNLVFLITDAKATCLSCDPRPLRQAEQPSQGPDPCELAQNPRYRKGPDVCFDNNI
NDEPLCPISGVSGLSPIPFLLLLQVLMLGPGRMILTVGAGPL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgcgtgcgggtgtttggacggggagttggcgcctggcaatggacacctacaga
ccacactccgtgtttattttactgttgttatcgtcggatatttgtctgccgtcgcagttt
ccaacacaactcataataaaggaatgggtggatcagatgcagatagagctggtgaccctg
gcagacatggccagcgccgggaagagcctcacacagatcttcctggacaaccagaacctg
tacacagtagagtctaatgatgctgaggaactagtggctagggcagccaggaacatagaa
cagctgctactgaagagggctgcagctctggagactctggccacagctgctgagaacttc
cagatggaacaccagtggaaggatgagtatgcggatggtgacattgtttactacaatgca
aaggacaatttggaggtgaatgagacagagggtaggaagaaccggatcaggccagccttt
aaggaagatatgctgtttaaacgcctcacctctcacaaccacactgctgtccacatccct
actgacatctacgatggctccaccatcgtgctgaatgagttgaactggacggaggcgctg
gaggatgtgtttaagaagaacagagaggatgaccctactctgctctggcaggtgtttggt
agtgctactggactggcccgatactacccagcctctccatggatggatgctcggaagacc
cccagtaagattgacctgtacgacgtacgcaggagaccctggtacattcagggagctgcc
tcacccaaggatatgttgatcctagtggacgcgagtggcagtgtgtctggtctgactctg
aagctgatcaggacctctgtcggtgagatgctagagactctgtctgatgatgactatgtc
aacgtggtctatttcaacaccagggtgaataacacagcgtgttttgaccacctggtccag
gccaacgtgaggaataagaagatcttgaaggatgctgttcagaacatctctgctaaaggc
atcaccaactataccaagggatttgagtttgccttcgaacagctctatgcaactaacatc
actagagccaactgtaacaagatcatcatgctgttcactgatggaggagaggagagagcg
tcggccatactgcagaaatacaacgctgacaagaaggtgcgaatcttcacgttctcagtg
ggtcaacacaactatgataaaggtccagtccagtggatggcctgcgctaataaaggatac
ttctatgagattccctctattggagcaatacgcatcaacactcaggagtacctggatgtc
ctgggcagacccatggttctagctgaccagctcgctaagcaggtccagtggactaatgtc
tacctcgacgctctggagctaggtctggtcatcacaggaaccctacctgtcttcaacaag
accaagtataaagatgatttgggtatagagattcagaaccagttgatcctaggggtgatg
gggattgacgtgtcactagatgacatcaagaagctcacgccgcgcttcactatcggacct
aatggatattattttgccatcgaccccaatggatatgtgctgctacaccccaacctccaa
cctaagaaaaggatccgtaaccgcaagacaagactcaataagccatatgccatcacgttc
catgagaaccctaaattccaggagcctgtcactctggacttcctcgatgctgaactggag
aacgacatcaaagtccagatcaggagaatgatgatagatgggaacccaggtgaagagacc
atagatactctagttaaaactcaggatgagaggtacatcgacagaggagtaagaacttac
acctgggctcaggtcaatggaacagactacagcttggctctggtcctgcctacctacagt
gaacactacatacaggcaaaactgggagacaccatcagacaggccatggctccatggggg
caaaaggccatggatactctgcaggtggagatgtttgatgagttgggctacaccttcatc
gcccccagggagtactgcaaaggcctgaaggacaacgacaacaacacccagttcctcctg
gacttcaaccagttcattgacaggaacacactggaagagccatgtaatgtgactctggtc
agtaggctgctgttggacgctgggttgaccgctgatctggtcaaactgtggaaggagcag
acattgggcgggattctggctaggtttgtagccactgatggagggatcaccagagtctat
ccaagaagtgctggggaggagtggacagagaatgctgagacctatgactcaagtttctac
aagaggactctggataacgacatctatattttcaccgcgccatacttcaacaagagtagg
gagtcaggttatgagtccggtattctggtgagcaaggctgtagacctcaacatagatgga
gtcaacctcaaaccagctgtggtgggagtgaaactgaacgtctctgcctggatgaacagc
ttcatgaacgccactatcaaagtcaactgcaaggatgaaatatgtggctgtctgaagaat
gataagcacgttgactgtgtaatcctggatgatggaggcttcctgctgatgtccaatcag
gatgagtatatcactcagattggtcagttcttcggggaggtggacccagtcgtgatgatc
agtctggtcaacacgtctctgtactccttcaacaagacttacgactaccagtcagtctgc
gaccctgagagagacagcaaggctgctgcagggccacgatctgtctatgtgcccactgta
gcagacatgctgagtataggctggtgggcatccactgctgcctggtcaataatacagcag
ctcttttacggtctcatattccccaacttcctagaggcagcggactcagatgaggacatg
tcagctaacatgtttaaggagagctgtatcacagagcagactcagtacttcttcgacaac
gaagagagatcctactcaggagtccttgactgtggaaactgctccaggatgtatcgagct
gagaagctgcccaaaactaacctggtgtttctgatcactgatgccaaggccacctgtctg
tcttgtgaccccagaccactacgacaggctgagcaaccctcccaaggtccagacccctgt
gagctggctcagaaccccagatacaggaaaggacctgacgtgtgtttcgacaacaacata
aacgacgagcccctgtgtccaatcagcggtgtctctggtctgagtcccatccccttcctc
ctattgctgcaggtgttgatgctgggcccagggaggatgattctgactgtgggggcggga
cctctctaa
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