Coregonus clupeaformis (lake whitefish): 121532048
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Entry
121532048 CDS
T08357
Name
(RefSeq) vascular endothelial growth factor receptor kdr-like
KO
K05096
FMS-like tyrosine kinase 1 [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121532048
04020 Calcium signaling pathway
121532048
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121532048
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121532048
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121532048
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
VEGFR family [OT]
121532048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_3
Ig_VEGFR-1-like_5th
I-set
Pkinase
Ig_2
ig
VEGFR-2_TMD
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Ig_6
Haspin_kinase
ICAM_N
Motif
Other DBs
NCBI-GeneID:
121532048
NCBI-ProteinID:
XP_041693632
LinkDB
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Position
2:complement(24719737..24800317)
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AA seq
1307 aa
AA seq
DB search
MAPLNCAKLSVLFHLITSISGQVILPAPLLLPSGDTHLLHTGKSLNLTCRGAAQLHWRLP
WRDVTSEGVRVEECEPQVNGHCSKLLVRNLSPNDTGFYSCRYAQPSADISSTYVYVKDKK
HQFVENHFRNPYTLFTYRHEATLVIPCRTTSPDQIVTLEAQPPLSEKIEQGKEWDPKMGF
KIPYGPYEFYSLLTCVTSVNGQRVQSHYIPLRKTIYLRNVKINPERIKLLVGDSLVLNCS
AETTFNGRINLTWEYPKRMVNRNPTVNKTRENPASVTRMYKAITLSNITMDDRGTYRCTA
EIGNSEMGNKKHASAKVTIYEHPYLNVSYKNERARRVVYTEGRSKLMFEPKVNALPPPNT
MTWYKDGVPINENSTCYESSGYNLLVKDVKQKDAGVFTIALGNKERGLYRNLSYTLVVRV
RPMISEEEVASVDLQPYMFGKQHQLTCTAFGVPMPVITWLWQPCHPDPTDKECTLYTEPI
PVQMDDKGNYSHNWIESIDNKTELVKGKNKTVSTLVVGAANVSGIYSCAAQNELGTRTLR
TLFYVDDHPQHLSIEPQTAIEGDDVTLTCRGTRYLYTDLQWYNPQNYTVTTANVTALQLS
PYSISRSLSLHNVSRSHTAGYQCWARNLHSKTVIVQTVLTVDERKRPWLRQNLTNQDVNS
SSTLTMACYALGVPPPYITWYKDNLPVQEGPGITLGDDGVLTIERVKKDDEGLYECLASN
NEGSVKASAVVTVVGDEGKANIEVIVLVCTGAAATFLWLMLILFIRKLRKPADYKMGPSI
IIDPDECPLDEQCERLQYDGSKWEFPRDRLRLGKTLGHGAFGKVVEASAFGIDKLSTCKT
VAVKMLKGGATTNERKALMSELKILIHIGHHLNVVNLLGACTKPGGPLMMIVEYCKYGNL
SNYLRSKRADFIVYKSQDGKVVTSGSGCDLSELIKRRLESVASTGSSASSGFVEDKSYCD
SEEEEEEPEDLYKRVLTMEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKI
CDFGLARDIYKDPDYVRKGDARLPLKWMAPEAIFDKVYTTQSDVWSFGVLMWEIFSLGAS
PYPGLHIDEDFCCRLKEGTRMRAPEYSSSEIYQTMLDCWQAEPGDRPTFTELVERLGDLL
QASVQQEGKHYIPIAALLSKEGDPSNTALSEETNTRPLSYRDSGSTWNIKIRPASVKTFD
EVTMENGSNDNHERGQSDSGMGLSSDDMNTLKRLESLARPLSIMALAMKAVSMSKESVLT
EGEKDKYPQPVPSLDFTLDDSSLEPGLECHSPPPDYNYVVRYSTPPV
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggccccgctcaactgcgcgaaactctcagtactctttcatttgatcacgtctataagc
ggtcaggtcatcctgcctgcccctctgctgctgccctctggggacacacaccttctccac
actggcaagtcactcaacctcacctgcagaggtgcggcccagctgcactggaggctgccc
tggcgggacgtcacctcggagggggtgcgtgtggaggagtgtgagccccaggtgaacggc
cactgcagtaagctactggtgagaaacctgagccccaacgacacggggttctacagctgc
aggtacgcccagccctccgccgacatcagctctacctacgtatacgtcaaagataaaaaa
catcagtttgtggagaaccatttccgcaatccatacaccctgtttacctacagacatgag
gccaccctagtgattccctgtagaacaacttctcctgaccagatcgtcactcttgaagca
cagccacccttatcagagaagattgaacaagggaaggaatgggaccccaaaatgggcttc
aagatcccatatggtccctacgaattctatagtctcctgacctgtgtcaccagcgtcaac
ggccaacgggtccagtcccactacatccctctgaggaaaactatctacctgaggaacgta
aagatcaacccagaacgtatcaagctgttagtgggagatagcctggtcctcaactgctcc
gcagagaccaccttcaatggaaggatcaacttgacttgggaatacccaaagaggatggtc
aatcggaaccccaccgtcaacaagaccagagagaatccggcttcggtcaccaggatgtac
aaagccatcaccttgtccaacatcaccatggacgacaggggcacgtacaggtgcacggct
gagatagggaactctgagatggggaacaagaagcatgcctcagcgaaggtcaccatctat
gaacatccatacctgaatgtgtcctataagaatgaacgggccaggagagtggtctacaca
gaaggtagaagcaagctgatgtttgaacccaaggtcaatgcactgccaccacccaacact
atgacatggtataaggatggcgtccctatcaacgagaactccacctgttacgagtcttca
ggctacaacctcctcgtcaaggacgtgaagcagaaggatgccggggtcttcaccatcgcc
ctgggcaacaaggagagaggcctctacaggaatctcagctacactctggtagtccgagtg
aggcctatgatctcagaagaggaggtggcctcggtggacctgcagccctacatgttcggc
aagcagcaccagctaacctgcaccgcctttggagtgcccatgcccgtcatcacgtggctc
tggcaaccatgccatcctgaccccaccgacaaagagtgtaccctttacactgagccaatc
ccagttcaaatggacgataaggggaactactcacacaactggattgagagcatagacaac
aaaactgaactggtgaaaggaaagaacaagactgtgagtacgctagtggtgggggcagct
aacgtctcggggatctactcctgcgcggcccagaacgaacttggcacccgcacactgaga
acccttttctatgtggatgatcaccctcagcacctgtccatcgagccccagactgccatc
gagggtgatgacgtcactctgacttgccgcggcactcggtacctgtacacagacctgcag
tggtacaaccctcaaaactacaccgtcaccaccgccaacgtcacggccctgcagctcagc
ccctactctatctctcgctccctctccctgcacaacgtatccaggagtcacacagcaggc
taccagtgctgggcgcgtaacctccacagcaagacagtcatagtccagactgtgctgact
gtggatgagaggaagaggccgtggctgagacagaacctgaccaatcaggatgtaaacagc
agcagtactctgactatggcctgctacgccctgggagtgccgccaccctacatcacctgg
tacaaagacaacctaccagtacaagagggtccaggtattactctgggggacgatggggtg
ctgacgatcgagagagtgaagaaagatgatgagggcttgtacgagtgtctggccagcaac
aatgaggggagtgtgaaagccagcgctgtcgtcactgtcgtgggtgatgaggggaaggcc
aacattgaggtgatcgtcctggtgtgtacaggagctgctgccaccttcctctggctcatg
ctcatcctcttcatccgcaagctgaggaagcctgcagactacaagatgggtccatccatc
atcatcgacccagacgagtgtcctctggacgagcagtgtgaacgcctgcagtatgacggc
agcaagtgggagtttccccgagaccgcctcagactgggcaaaactctgggccatggagcc
ttcgggaaagtggtagaggcctctgcttttgggattgacaagctctcgacctgcaagact
gtggccgtcaaaatgctgaaaggaggagctacgacaaatgagcgcaaggctctgatgtcg
gagctgaagatcctgatccacattggtcatcatctgaacgtggtcaacctgctgggagcc
tgcaccaagcctggaggtccattgatgatgatagtggagtactgcaaatatggaaacttg
tcaaactacttgagaagcaagagggctgatttcatcgtttataagagccaggacggtaag
gtggtgacgtcggggtcaggctgtgacctgagcgagctcatcaagcggcgcctggagagc
gtggccagcaccggaagctcggccagctccggcttcgtggaagataagagctactgcgac
tcagaggaagaggaggaagagccagaggatctgtacaagagagtgctgacaatggaagat
ttgatttgctacagtttccaagttgcaaaaggcatggagttcctggcttcacgcaagtgt
attcatcgtgatctggctgcaagaaacatcctactttctgagaataatgttgtgaagata
tgcgattttggactggccagagacatctacaaagacccagactacgttcgcaaaggagat
gccagactgcccctcaagtggatggcgccagaggccatttttgacaaggtctacaccact
cagagcgatgtgtggtcctttggagtcctgatgtgggagatcttctctctgggtgcctct
ccatatcccggcttacacatcgacgaggacttctgctgccgactgaaggaagggaccagg
atgagagctccagaatactcctcctctgaaatataccagaccatgttggactgctggcag
gccgagccaggagacaggccaaccttcactgagctggtggagagactaggagacctgcta
caggccagcgtacagcaggagggcaagcattacatccctatagcagccctgctgtccaag
gagggtgacccctccaacacggccctgtcagaagagaccaacaccaggccactctcttac
cgcgactcagggagcacctggaacattaagatccgtccagcaagtgtgaagacctttgat
gaggttaccatggagaacggctctaacgacaaccatgagaggggccagtcggacagtgga
atgggcctgtcgtctgatgatatgaacacgctgaagcgcctggagtccttggcccgacct
ctcagcatcatggccctggcgatgaaggcggtgagtatgagtaaggagtcggtgctgact
gaaggagagaaggacaagtaccctcagcctgtcccctctctggacttcaccctggacgac
tcgtccctggagcccggtctggagtgccacagcccgccccctgactacaactatgtggtg
cgctactccaccccacctgtgtag
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