Coregonus clupeaformis (lake whitefish): 121532223 Help Entry 121532223         CDS       T08357                                  Name (RefSeq) protocadherin-15-like isoform X1   KO K16500   protocadherin-15 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04519   Cadherin signaling Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04519 Cadherin signaling     121532223  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:cclu03037]     121532223    04515 Cell adhesion molecules [BR:cclu04515]     121532223 Cilium and associated proteins [BR:cclu03037]  Primary cilia and associated proteins   USH complex and associated proteins    121532223 Cell adhesion molecules [BR:cclu04515]  Cadherins   Protocadherins    121532223 SSDB OrthologParalogGFIT Motif Pfam:  Cadherin ECD PCDH15_12th Ig_Cad99C_N Cadherin_FAT4_N Cadherin_CELSR2_9th CDH23_a-b Ig_SMCHD1_6th Big_9 Motif Other DBs NCBI-GeneID:  121532223 NCBI-ProteinID:  XP_045062064 LinkDB All DBs Position 1 Genome browser AA seq 1724 aa AA seqDB search MQKRSWHFKWLGIGLLLLATCCPSQDTDDWQYDECKLSRTGPPATIVAIDEESPNGTLLV ENMQIQGRVEDPGRTISLSLRDNYNHWVILDPVRQRLYLNSTGRALDRDPPSYIHSIVVQ VQCTNELVGTVILHEVRIVVRDRNDNAPRFQQPRYYVAINELTPVGTTIFSGFTGNNGAR DIDDGPNGQIEYIIQYNPTDPTANRTFDIPLTLSGSVVLRERLNYEEITRYLVLIQANDR APYPNERRTATTTLTVDVLDGDDLGPMFLPCSLVDNTRDCSPLTYRAHILELTDPSKVNP VNVTPIIQAVDQDRNIQPPSERPGILYSILVGKPETYVDFFSLNRTTAELQLLKPLIRDL DNRFDLVIKAEQDNGHPLPVFANLHIEVLDENNQSPFFLETTYQGFIIESAPVGTTVFTD ASLTTPLGINVLDNDVEETKDPMLQISLDNYNTIFTVTPSGITRYLTLLKPVDREEQQSY TITIVASDGVQESTPVTINITVIDANDNTPTFPNASYSVNVYTDMQPGETILQLTALDAD GGPNGLVTYKILAGDQGHFIINNRSGVITVVPGVSLAVGHSYTLTVKAVDNGPESQRRSS ITTVYIEVLPPNNQSPPRFPRFLYSLEVSEAMRTGATLLSLQATDRERDVITYSIQNGDP HYLFELSQISGLLVLGKPLDRETDDRYTLIVTASDGRPDGTSTATVNIVVTDVNDNDPVF DPLLPQNLTVTEEEANCFVGQVKATDPDAGVNGQVRYRLVNHADLFRINSNGTISTAVPL DREVRGQYDLIVEAEDGAVEDPRRTTLTLSVTVLNVDDNSPVFSQPSYTVNLPENSPKNT VILQFTAKDADLDSNITFRIRTQEARQLFAVSPVTGELSVLQTLDFETLAASDHTYTFVV EALDNEGIMPPGLATVTVKITDMNDYSPVFSQVVYRGMVAPNAVKGTVVATVQAEDLDPP GTPASHVRYRMDLDENPYSGSIFDVDEVTGSVITRVNLNEEPNLVFSLVIVAYDDGEPMK VNKTLVVITVLQPSIIPVFTQEEYRFPPVSEKSKVGKVVGVILAAAVNQTIIYSIVEGNE GGVFRLNNNTGVISTVKLLDHETNASYSLRVEADSMGVVESNLRAPSKTNTARVFIDVLD ENDHPPVFTKPLYLGGVAEDAKTFTSVLQVQALDKDTGNYSSMQYRLVIPPTTNGKDGFV IEPYTGVIKTAIMYRNMRRSYFKFEVVATDNYGEGGLSSKAEVVVSVVNLLDMQVVVSNV APTVVEQNKDKLLGVLERYVQDQIPGAKVVVESIGPRRFGDGFEQEDYSKSDLMVYAIDP LTNRAISRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRSPDVVTSVKKAVQTVGYTEG ALLALAVIIILCCIPAILIVIITYRQFKERQAECAKTAQIQMALLTGKSAVAATNNLYEE LGDSTMRGYGHHEQQQLLRPSLLRPEELSIESGIDPGQDYYTQDYYNYDHGYELPQYGSR RKLISPTGLYEEYGEVMVDDDGSYYYYSPQESDGEYGRKKRIKLVVDREYETSSTGEDSA LEPQRNRLSNLTNHSNVNGSVYLAQNGSVIRTRRAAHSNNIKVNSPVRLGKHFKKLDKLA VTHEERLPLNSPVATTSSADKNLNTRPSSGSLASSTTGPESIASKSNITKARSERTRNTE EQESTVDNEDVREPLESQSDRTHSDDEELWMGPWNNLHIPMTKL NT seq 5175 nt NT seq  +upstreamnt  +downstreamnt atgcagaagaggtcatggcacttcaaatggttagggataggacttctgctgttagctact tgttgcccgtcacaagacacagacgactggcagtatgatgaatgcaaactctccagaact ggtccacctgccaccatcgttgccatagatgaagagagccccaacggaacacttttggtt gagaatatgcaaatccaaggccgagtggaagacccaggcagaaccatctctctttccctc cgagacaactacaaccattgggtaatactggacccggtcagacaaaggctctacctcaac agcaccggcagggccctcgaccgagatcccccgtcctacatccattccatcgttgtccag gtccagtgcaccaatgagctggtcgggaccgtcattttacacgaggtgcgcatcgtggtg agggatcgcaatgacaatgcgccccgattccagcagcctcgttactatgtcgccataaat gagttgaccccagttggcaccaccatcttctccggcttcactgggaataatggagccagg gacattgatgacggccctaacggacagatcgaatacatcatccaatacaacccaactgac ccgacagccaacaggacgtttgacatccctctcaccctctctggctcggtggtcctgagg gagaggctcaactatgaggaaatcacccgctacctggtcctcatccaggccaatgaccgc gccccgtaccccaacgaacgacgcaccgccaccaccaccctgaccgtagacgtgctggac ggggatgacctgggtcctatgttcctaccctgctctctggtcgacaacacacgtgactgc agccccctcacctaccgggcccacatcctggagctcactgacccaagcaaagtgaaccct gtcaacgtgacgcccatcattcaggccgtggaccaggacaggaacatccagcctccgtct gagaggccaggaatcctctattccatcctcgttggcaagcctgagacgtacgtcgacttc ttctctctgaaccgaaccaccgccgagctgcagctcctgaaaccgctcatcagggacctg gacaatagatttgacttggtgatcaaggcagagcaggacaacggccaccccctgcctgta tttgctaacctccacatcgaggttctggatgagaacaaccagtcaccattcttcctggag accacataccagggcttcatcatcgagtcagcaccagtgggtacgacagtgttcaccgac gccagcctcaccacccctctggggatcaacgttctggacaacgacgttgaggagacgaaa gatcccatgctgcagatatccttggacaactacaacacaatcttcacagtgacaccttca gggattactcgctacctgacactgctgaagcccgtggaccgtgaagagcagcaaagctac actatcacaattgtggcttcagatggagttcaggagagcactccagtgaccattaatatc acagtgatcgacgccaacgacaacacgccgaccttccccaacgcctcctacagtgtcaat gtttacacagatatgcagcctggggaaacaatattacagctgactgctctggatgctgac gggggtcccaacgggcttgtgacctacaagatcctggcgggggatcaaggacacttcatc atcaataaccgctctggagtgatcaccgtggtgcctggtgtctccctggccgtgggacac tcctacaccctgaccgtgaaggctgtggataatggcccggagtcccagaggaggagctcc atcaccaccgtgtacattgaggtgctcccccccaacaaccagagccccccacgctttccc cgcttcctctacagcctggaggtcagcgaggccatgaggaccggagccacactcctcagc ctgcaggcaacggaccgtgaaagagatgtcattacctacagcatccagaacggggatccc cactacctctttgagctctcgcagatatcagggctgttggtcctggggaaaccgctggac agggagacagatgatcgctacaccctcattgtaactgcttcagatggtcgtccagacggg acctccactgccactgtgaatattgtggtcactgatgttaacgataatgaccctgtcttc gatccgctcctgccccaaaacttaacagttacagaggaggaggccaactgttttgtgggc caagtaaaggccacagatccagacgcgggggttaatggccaggtgcgctaccgactggtc aaccatgccgacctcttcaggatcaactccaatggcacgatctccaccgcagtgcctttg gatcgagaggtcaggggtcagtatgacctcatcgtggaggcggaggatggagcggtggag gaccccaggaggaccacactcactctgtcggtgaccgtgctgaatgtggacgataacagt ccggtgttctcacaaccgtcctatacggtcaatctgccggagaatagtcctaagaacacg gtcatcctgcagtttacagccaaagacgctgacctggactccaacatcaccttccgtatc cggacccaggaggccaggcaactgtttgccgtcagcccagtgactggagagctctctgtg ctgcagactctggactttgagaccttggcagcctcggaccacacctacaccttcgtggtg gaagccctggacaatgaagggatcatgcccccaggcctggccactgtcactgtaaagata acggatatgaatgactactctccagtgttcagccaggtggtgtacaggggcatggtagct cccaacgcagtcaaggggaccgtggtcgccacggtacaggcagaggacctagaccctcct ggcacccctgccagccatgtgcgttacagaatggacctggatgagaacccttacagtggc agcatctttgacgtggacgaagtcacaggcagcgtcatcacacgagtcaacctcaatgaa gagcccaatctagtgtttagtctggttattgttgcctatgacgacggggagccaatgaaa gtcaacaagaccctggtggttatcactgtcctgcaaccgtccatcataccagttttcacc caggaggaatacaggtttccccctgtgagtgagaagtctaaggtggggaaggtggtcggg gtcatactggctgcggctgtcaatcaaactatcatctactccatagtggagggcaacgag ggaggtgtgttcaggctcaacaacaacaccggggtgatctctacagtcaagctgctggac catgagaccaacgccagctacagcctcagagtagaggctgactccatgggggtggtcgag tccaatctccgagcgccctccaagaccaacacagcgagggtgttcattgatgttctggat gagaatgatcaccctcctgtctttaccaaacccttgtacctgggaggagtggccgaggac gccaagacattcacttctgtactacaagtccaggccctggacaaggacacagggaattac agctccatgcagtacaggctcgttatcccccccaccaccaatggcaaggacggctttgtc atcgagccctacaccggtgtcatcaagactgccattatgtacaggaacatgcgccggtct tacttcaagttcgaagtggtcgccactgacaattacggcgaggggggactgagtagcaag gcagaggtggtggtatccgtggtgaatctgttggatatgcaggtggtggtctccaatgtt gctcctacagtggtggaacagaacaaggataagctcctcggggtcctggagcgctatgtg caggaccagattccaggggccaaagtggtggtggagtccatcggaccgcggcggttcggt gacggcttcgagcaagaggactactccaagtcggacctgatggtgtacgctatcgaccct ctgaccaacagggccatttcacgccaagagctgttcaagtttctggatgggaagctgctg gacatcaacaaggagtttcagccgtacctgggccgaggcgggaggatcctggagatacgc tccccggacgtggtgaccagcgtgaagaaggccgtgcagaccgtgggctacaccgagggg gcgctgctcgccctagccgtcatcatcatcctctgctgcatccccgccatcctcatcgtc atcatcacctacaggcaattcaaagagagacaggcggagtgtgctaaaactgctcagatc caaatggccctccttactggcaaatcagcggtcgctgccaccaacaacctgtacgaagag ctgggggacagcaccatgcgcggatacggacatcatgagcaacagcagttactcaggccc tctcttctgagaccggaggagctctctattgagtctggcatcgatcctggccaggactat tacacccaggattattataattatgaccatgggtatgagctgcctcagtatggcagtcgc aggaagttgatatctccgacaggcctgtatgaagagtatggagaggtgatggtggacgac gatgggagctactactattacagtccacaggagtcagacggagagtacgggaggaagaag cggatcaagctggtggtggacagggagtatgagactagttccacgggggaggacagcgct ctggagccccaaagaaaccggctgtccaacctgaccaaccacagcaacgtcaacggcagc gtgtacctggcacagaacggctcggtcatacgcacccgccgggccgcccactcaaacaac atcaaggtcaactcccctgtgcggctgggcaagcactttaagaaactagacaaactggcg gtgactcatgaggaaagactgccacttaacagcccggtggcgaccacgtcctcggccgac aagaacctaaacacccggccctccagcggctccctggcctccagcaccacaggccccgag agcattgcgtccaagtccaacatcaccaaggccaggagtgagagaacacggaacacggag gagcaggagtcaacagtggacaatgaggacgtgagagaaccattagagtctcagagtgat cgcacccattccgatgacgaggaactatggatggggccctggaacaatctgcacatacca atgacaaaactgtga

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