Coregonus clupeaformis (lake whitefish): 121532254
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Entry
121532254 CDS
T08357
Name
(RefSeq) bile acid receptor-like isoform X1
KO
K08537
farnesoid X receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121532254
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121532254
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121532254
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
121532254
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121532254
NCBI-ProteinID:
XP_041694019
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Position
19:complement(52831490..52869046)
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AA seq
485 aa
AA seq
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MNDWVGPDVNVVGLLQIPPSDGFPLSESSHFFDILAEQGSPLLQDQEVLPFTSYPSMQYP
SVEPTMSSPPIYSSQNYYPQYSSDEWYSPTGMYELRKGPQEGTYNAEMEEASTVVPAVCK
RTRHTSHTGRVKGEELCVVCGDKASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGTCE
MDMYMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNTKASLGESTGDETEGGDNG
DTKQVTSTTKLSKEKLELSQEQQAFLSFIVEAYQKHRIPQDMAKELLQEQFNAEENFLLL
TEMATSHVQVLVEFTKDIPGFSALDHEDQIALLKGSAVEAMFLRSAQVFTRKLPHGHTEV
LEDRIRKSGISEEFITPMFTFYKSIGELQMMQEEHALLTAITILSPDRPYVKGQQAVERL
QEPMLEVLRRFCAMQHPLEPQHFARLLGRLTELRTLNHHHAEMLTSWRMSDHKFTPLLCE
IWDVQ
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaatgattgggtgggccccgacgtcaatgtggtgggactactacagatcccacccagc
gatggattcccactgtctgagagctcacacttctttgatattctggcagagcaagggagc
cctctgctccaggaccaggaagtcttacccttcaccagctatcccagcatgcaatacccc
tcggtggagcccaccatgtcctccccaccaatctactccagtcagaactactacccccag
tacagcagcgatgagtggtactcacccacagggatgtatgaactgaggaaaggaccccaa
gagggcacttataatgctgaaatggaagaggcgtccaccgtagtgcctgcggtgtgcaag
agaacccggcacacatcccacacaggcagggtcaaaggggaggagctgtgtgtggtgtgt
ggggacaaggcatctgggtaccactataacgctctcacctgtgaggggtgtaaaggcttc
ttcaggcggagcatcaccaagaacgctgtgtacaagtgcaagaatggagggacctgtgag
atggacatgtacatgcggaggaagtgccaggagtgtcgtctccggaagtgcaaggagatg
ggcatgctggcagagtgtctgctgacagagatccagtgtaaatctaaaaggctgaggaaa
aacaccaaggcctccctgggagagtccactggggacgagacagaggggggagacaacgga
gacaccaaacaggtcacctccaccaccaaactgtcaaaggagaagcttgagctcagtcaa
gagcagcaggcgttcttgagcttcatcgtagaagcttaccagaaacatcgaattcctcaa
gacatggccaaagaactgctacaggagcagttcaatgcagaagagaacttcctccttttg
acagagatggccaccagtcatgttcaagtgctggtggagtttaccaaagacattccaggt
ttctcagccctggaccatgaggatcagatagctctgttgaagggctcggcagtggaggcc
atgttcctgcgctcagcacaggtgtttaccaggaagctaccccatggacacacagaggtg
ttggaggacaggatacgcaagagtggcatatcagaggagttcattacacccatgttcacc
ttctacaaaagcattggggaactccagatgatgcaggaagaacacgccctcctcactgcc
attaccatcctctcaccagaccggccatacgtgaagggccagcaggcggtggagaggctg
caggagcccatgttggaggtgctcaggaggttctgtgccatgcagcacccgctggagccc
cagcactttgcccgtctcctgggccgtctgaccgagctgcgtaccctcaaccaccaccat
gccgagatgctcacctcttggcgcatgagcgaccacaagttcacacccctcctctgcgag
atctgggatgtacagtaa
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