Coregonus clupeaformis (lake whitefish): 121534445
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Entry
121534445 CDS
T08357
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K20894
shank-associated RH domain-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04217
Necroptosis
cclu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
121534445
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121534445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121534445
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
121534445
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Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
DUF3157
ubiquitin
Motif
Other DBs
NCBI-GeneID:
121534445
NCBI-ProteinID:
XP_045061823
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Position
21:complement(37149613..37161023)
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AA seq
443 aa
AA seq
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MALSAGGWAQTPVPAPFQSVHGGPALASCNTVLMSVRVSVCHSGIRPLCLPGAGDEALRL
QLSMDPSKAGEFRLALRDSSGSGRSVFIAEFDLRSVQYEVKSPHLHEIRLATPPHDCIRF
NFRCDLEAEQWATVVMSSLREAHRVAANSSPHPLDDRLQHTAAVALEQRRTASLPLTEEL
CLELARAIEAGESQAAAQHASALAHQKAALTIQLSEKSYAEGEIRLSVAVEDISSSCCVT
VKVFPHMTVAALKQQVFLEYGFHPCVQRWVIGQCLCTEPRSLASYGVQRDGDMAYLYLVS
ARHARLTRQLFQQDQEGALLTPPPPTSNRSASQDWRGYSTLPSRLSHNSQGSTGGAADRL
GMSEIQEALNLETLQINNKPDQPCKASKTQTEWACPSCTFINKPSRPGCEICSTARPDSG
EHSLIQQEKGRRVEQGEIGALIS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcactaagcgcgggcggttgggctcaaacgcctgtgccagccccattccagtctgta
catggtgggcccgcactggctagctgcaacaccgtcttgatgtcggtacgagtgtcggtt
tgccattctggaattcgaccgctttgcctccccggagctggcgatgaggctctccgtctt
cagcttagcatggaccccagcaaggctggagagtttcggctagcactgagggacagtagc
ggaagcggccgtagtgtgttcattgcagagtttgacttgcgctctgtgcagtatgaggtg
aagtctccacaccttcacgagattcgtctggcaacgccccctcatgactgcatccgcttc
aacttccgctgcgacctggaggctgagcagtgggccaccgtggtgatgtcatcactaaga
gaggcacacagagttgctgcaaatagttccccccatcctctggatgaccgactacagcac
acagcagcagtagctctggaacagcgccggacagcctccttaccactcactgaggagctg
tgcctggagcttgcccgggcgatcgaagcaggcgagagccaggctgctgctcagcatgcg
tctgctctggctcaccagaaggcggcactcactatccaactgtctgaaaagagttacgca
gaaggagagatacgtttgtctgtggcagtggaggacatttcctcttcatgttgcgtcaca
gtgaaagtcttcccacacatgaccgtcgcagcactcaagcagcaggtgtttctggagtat
ggcttccacccttgcgtgcagcgctgggtgatagggcagtgtttgtgcacagagcccagg
tccctggcctcttatggggtccagagggatggggacatggcctacctctacctggtctca
gcccgccatgcccgcctcacccgccaactgttccagcaggaccaggagggcgccctactc
accccacctccacctaccagcaacaggtctgcgtcccaggactggaggggctacagcacc
ctgccttccaggctcagccacaactcccaggggagcaccggaggtgcggctgacaggctg
ggtatgagcgagatccaagaggccctcaacctggagactctgcagatcaacaataaacca
gatcaaccctgcaaagccagtaaaacacagacagaatgggcgtgtccctcctgcaccttt
atcaacaagccttcccgaccaggctgtgagatctgcagtacagccagacctgactcgggg
gagcacagcctcatacaacaggagaaaggaagaagagtggagcagggggagattggtgca
ttgatcagttga
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