Coregonus clupeaformis (lake whitefish): 121534848
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Entry
121534848 CDS
T08357
Name
(RefSeq) oxysterols receptor LXR-alpha isoform X1
KO
K08536
liver X receptor alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03320
PPAR signaling pathway
cclu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121534848
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121534848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121534848
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121534848
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121534848
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
121534848
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
121534848
NCBI-ProteinID:
XP_041697367
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Position
21:complement(804015..828859)
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AA seq
469 aa
AA seq
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MSTLSATDITDVGHGEVFDGAPELQLNCLGSGNDRSSAEMKHEGNLLPLEPPHHAGFPSP
PQKGPSSLAEKSSPLPMEPSDIKADPAGDMPANTEGQPVKRKKGPAPKMLGNEVCSVCGD
KASGFHYNVLSCEGCKGFFRRSVIKSAQYSCKNNGRCEMDMYMRRKCQQCRLRKCREAGM
LEQCVLSEEQIRGKKMKKNEEETARTSAVVTPTPVPEVVPLAPEQLEMIEKLVSMQKQCN
KRSFIDRPKVTVIPWPQSQDPQNREVRQQRFAHFTELAIMSVQEIVDFAKQLPGFLELTR
EDQIALLKTSTIEIMLLETSRRYNPAIESITFLKDFSYNKEDFAKAGLQLEFINPIFEFS
KGMNDLHLDEAEYALLIAINIFSAGQRSSDRPNVQDHELVERLQQPYVDALRSYIMIKRP
NDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactgtctgcgactgatatcacagatgttggtcatggtgaggtgtttgacggg
gccccagagctgcagctgaactgccttggcagtggtaacgaccgcagcagtgcagaaatg
aagcatgagggcaacctcctccccctggaaccgccccaccatgcagggtttcccagcccc
ccccagaaagggccttcctcactagctgagaagagcagcccgctgcccatggagcccagc
gacatcaaggccgaccccgccggcgacatgcctgccaacacagagggccagccggtgaag
aggaagaagggtccagcccccaagatgctggggaacgaggtgtgcagcgtgtgcggggac
aaggcttcgggcttccactacaacgtgctgagctgcgagggctgcaagggcttcttccgc
cgcagtgtcataaagagcgcccagtactcgtgcaagaacaacggccgctgtgagatggat
atgtacatgcgccgcaagtgccagcagtgccggctgcgcaaatgccgtgaggcgggcatg
ctggagcaatgtgttctctcagaggagcagatccgagggaagaagatgaagaagaacgag
gaagagactgctcgcacgtctgccgtggtgacccccaccccggtgccggaggtggtcccg
ctggcgcccgagcagctggagatgatcgagaagctggtgtccatgcagaagcagtgcaac
aagcgctcgttcatcgaccggcccaaagtcacggtgattccgtggccccagagtcaggac
cctcagaacagggaggtgcgacagcagcgttttgcccacttcaccgagctggccatcatg
tcggtccaggagatagtagactttgccaagcagctgcctggcttcctggagctcaccaga
gaggaccagattgccctgctgaagacctcaaccattgagatcatgctgctggagacatcg
cggagatataaccctgccattgagagcatcacgttcctgaaggacttcagttataacaag
gaggattttgccaaagcagggctgcagttggagtttatcaaccccatctttgagttctcc
aagggcatgaacgacctgcacctggacgaggcggagtacgctctgctcatcgccatcaac
atcttctctgcaggtcagaggtcaagtgaccggcccaatgtgcaagaccatgaactggtg
gagcgactgcagcagccgtacgtggacgcactacgttcttacatcatgataaagagacca
aacgatcacctgatgtttccacgcatgctcatgaagctggtcagcctccgcaccctcagc
agcgtccactctgagcaggtctttgccctgcgcctccaggacaagaagctcccgccgctg
ctctctgaaatctgggatgtccacgagtga
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