Coregonus clupeaformis (lake whitefish): 121535393
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Entry
121535393 CDS
T08357
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
cclu04520
Adherens junction
cclu04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121535393
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121535393
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
121535393
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121535393
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121535393
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
121535393
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
121535393
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Type II RPTP family
121535393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_2
ig
fn3_2
Interfer-bind
CRLF2-like_D2
Tc-R-P
PTP-SAK
DSPc
V-set
Y_phosphatase3
C2-set_2
PTPlike_phytase
PTP-NADK
Ig_C17orf99
Fn3_PTPRU
Motif
Other DBs
NCBI-GeneID:
121535393
NCBI-ProteinID:
XP_045061882
LinkDB
All DBs
Position
21:complement(48449623..48868752)
Genome browser
AA seq
1930 aa
AA seq
DB search
MVPNIHPAVPLLPRGAAPLLLLLSCLVLSSQADSLPSFIKSPEDQTGISGGVASFVCQAT
GDPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEALYECTATNSGGEIN
TSAKLTVLEENQIPHGFPNIDMGPQLKVVEKTRTATMLCAASGNPDPEITWFKDFLPVDI
NSSNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAMNSAGTRYAAPANLYVRVRRVP
PRFSIPPTNHEVMPGGSVNLTCVAVGSPMPYVKWIMGEIELTKEDEMPIGRNVLEVTMVK
ESANYTCVAISSLGMIEATAQVSIKALPKPPTSLIVTETTATSVTLTWDSGNPEPVSFYM
IQYRPKTTYTGFQEVDGVATTRYSIGGLSPYSEYEFRVMAVNNIGRGPPSDPVETRTGEQ
APSSPPLAVQVRMLSASTMLVQWEPPEEPNGQIRGYRVYYNSDMNAPLSGWQKHNTDDSR
LTTISGLTTDITYSLRVLGFTSVGDGPPSEILQVKTQQGVPAQPSSFEAEAELDTRIMLT
WLWPVQDSITKYELQYWEGNSDNKIHVTFNPVGSYAVEGLKPDTLYRFSLAARSEFGLGV
YTQPIEARTAQSTPSAPPQEVHLSSLSSTSLKVSWVAPPAASRHGAIVAYTVSYQSTGSA
SEDPDRHDVPGIGADASSYVLEDLEKWTEYQVWVRAHTDVGPGPESAPVRIKTKEDVPGA
PPRKLEVEAVNSTAIRVTWKAPLPGKQHGQIRGYQVIYSRLENGEPRGQPSVMDVPLPEA
QWNIEESTEYEAIITGLHSETTYSVTVAAYTTKGDGARSKAKVITTTGAVPGRPTMMIST
TMGDTALIQWQPPKDMVGEMMGYQLQYRRQEDTAYTSREFKRTDDHHTVTNLHKGATYVF
RLSALNRAGIGEAYVKEISTQEDVPSGYPLNLRVTGLTTSTTQLAWDPPALSERNGKILQ
YVVAYRDINSHSNSTNRTLDTHMTIQGLKPDTTYDIRVQAFTSKGGGPISPSIQSRTMST
SPAFATSFGVKAVMKTSVLLTWEVPENYKSQVPFKILYNQQSVEVQGNLKRKLITRLQPD
RHYSFVLMSRGNTAGGLQQQVSIRTAPDLLKTKPVLYSNQQNQKGKLTIDLPKVQTTGQV
RWYYIVVVPVSQSSSRLWENPDEMDLEELLESDEGPVLRRRRQVEPTRPYIAAKLASLPA
TFTLGDEKSYNGFYNRPLPSHQRYLAFVLAALKEQEQDNSDRHRTFSASPYSDPIQVSPN
VSRSVEQPEMLWVLGPVLAVVLIIVIVITILLIKSKQERKRASPLPKDDHSGGVKDSLLG
NSSDPVEMRRINCQTPGPSTQRCPNTPRMREHPPITVCDLADHIERLKANDGLRFSQEYE
SIDPAQQFTWENSNMEVNKPKNRYANVIAYDHSRVVLTSVDAVPGSDYINANYIDGYRKQ
NAYIATQGPLPETLSDFWRMVWEQRAHTIVMMTRLEEKSRVKCDQYWPVRGTETYGMIQV
SMLDTVELATYSVRTFALYKNGSSEKREIRQFQFMAWPDHGVPEYPTPILAFLRRVKACN
PPDAGPMVVHCSAGVGRTGCLIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQY
VFIHEALLEAATCGLTEVPARNLYAHIQKLTQPPTGETVTAMELEFKRLANSKAHTSRFI
SANLPCNKFKNRLVNIMPFESTRVCLQPIRGVEGSDYINASCIDGYRQQKGYLATQGPLA
ETTEDFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQY
ILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPITV
HCSAGVGRTGVFITLSIVLERMRYEGVVDLFQTVKTLRTQRPAMVQTEDQYQLCYRAALE
YLGSFDHYAT
NT seq
5793 nt
NT seq
+upstream
nt +downstream
nt
atggtgcctaacattcaccctgcagttcccctcctgcccaggggggcggcgccactcctg
ctgctactcagctgcctggtgctctcctctcaggctgacagcttgccaagtttcatcaag
tctcccgaggaccagactggcatatcgggtggcgtagcgtccttcgtgtgccaggccaca
ggagatcccaaacccaggatcacttggatgaagaagggcaagaaagtcagctcccagcgc
tttgaggtgatcgagtttgatgatggttctgggtctgtgctgaggatccaacccctgagg
acacacagagacgaggccctgtacgagtgtacagccaccaacagtggcggagagatcaac
actagtgccaaactcaccgtgctagaagagaaccagatcccacatgggtttcccaacata
gacatgggtccccagctgaaggtggtggagaagaccaggacagccaccatgctatgtgct
gccagcggcaaccctgacccagagatcacctggtttaaagacttcctgcctgtagatatc
aacagcagcaacggacgaatcaaacaactccgctcaggcggtacaccgattagaggagcc
ctgcagattgagaacagtgaggagtcagaccaggggaagtatgagtgtgtggccatgaat
agcgctggaacgcgctacgccgccccagccaatctctacgtgcgagtacgtcgtgtccct
ccgcggttctccatcccacctaccaaccatgaggtgatgcctgggggcagtgtcaacctg
acgtgtgttgctgtgggatcgcccatgccctatgtcaagtggataatgggagaaattgaa
ctcaccaaggaggatgagatgcccattggtcggaatgttctggaggtgaccatggtcaag
gagtcagccaactacacctgcgtggccatatcatcactgggcatgatcgaggctaccgct
caggtctccatcaaagccctccccaagcccccaacctctctcatagtgactgagaccaca
gccaccagtgtgactctcacctgggactctgggaaccctgaacctgtgtccttctacatg
attcagtacaggcctaaaaccacctacacgggcttccaagaggtggacggagtagctacc
acccgttacagcatcggcgggctcagcccctactcagagtacgagttccgcgtgatggcg
gtgaacaacattgggcgtgggccgccctctgacccggtagagacccgtacgggggagcag
gctccctcttcacccccactggctgtccaggtccgcatgctgtctgcctccaccatgctg
gtccaatgggaaccacccgaggaacctaacggacagatcagagggtaccgtgtgtactac
aactcagacatgaacgcccctctgagtgggtggcagaaacacaacactgacgacagccga
ctgaccaccatctcagggctgaccactgacatcacctacagcctcagggtgctggggttc
acctctgtaggggacggacccccctcggaaatactgcaggtcaagactcagcagggagtt
cctgcccagccctccagcttcgaggcggaggcagagttggatacacgtatcatgttgacc
tggctgtggcctgtccaggattccatcaccaagtacgaactacagtactgggagggtaac
tctgacaacaagatccacgtgacctttaaccctgtggggtcatacgccgtggagggtctg
aagcccgacaccctgtaccgcttctccctggcagcccgctccgagttcggcctgggggtc
tacacacagcccatagaggcacgtactgcccagtccaccccctccgccccccctcaggag
gtacacctgtccagtctaagctccacctccctcaaggtgagttgggtggccccgcccgct
gcgtcccgtcatggcgccattgtggcgtacaccgtcagctaccagtccacgggcagcgcc
agcgaggaccccgatcgccacgatgtgcctggcatcggagcagacgcctctagttatgtg
ctggaggacctggagaagtggacagagtaccaggtctgggttagagctcacactgatgta
ggcccgggcccggagagcgctccggtcaggatcaaaactaaagaggacgtgccaggtgcc
cctcccaggaagctggaggtagaagctgtgaactctacagccatcagggtaacatggaag
gcccccctgccagggaagcagcacgggcagatcaggggttaccaggtcatctactcccgg
ctggagaacggggaaccacggggtcagcctagcgtcatggacgtacctctgcctgaggct
cagtggaatattgaggagtccacagagtatgaggccatcatcactggtctgcactctgag
accacctactctgttaccgtggcagcctacaccaccaagggagacggggcacgcagcaag
gctaaagtcatcaccaccactggagcagtgccgggtcgccccaccatgatgatcagcacc
actatgggtgacactgccctgatccagtggcaacctcctaaagacatggtgggagagatg
atgggctatcagctgcagtacagacgccaagaagacacggcgtacacctcgagggagttc
aaacgtacggacgaccaccacaccgtcaccaatctgcacaagggtgccacctacgtgttc
cggctgagtgcacttaaccgggccggtatcggagaggcctatgtcaaggagatcagcacg
caggaagacgtgcccagcgggtaccccttaaacctccgtgtgacagggttgaccacgtct
accacccagctggcgtgggatcccccagcgctgtctgagaggaacgggaagatactgcag
tatgttgtggcgtacagagacatcaacagccactccaacagcaccaacaggacgttggat
acacacatgaccatccagggcctgaaacctgacaccacctatgacatcagagtccaggcg
ttcaccagtaaaggagggggacccatcagtcctagcatacagagcaggaccatgtccaca
tcaccagcgtttgccacaagcttcggtgtcaaagccgtcatgaaaacatcagtcctgctc
acgtgggaagtgccagaaaactacaagtcccaagtgcctttcaagatcctgtataaccag
cagagtgtggaggtacaggggaacctgaagaggaagctgatcaccaggctacagcctgat
agacactacagcttcgtgttgatgtccagagggaacaccgccgggggtctacagcagcag
gtctccatcaggaccgccccggacctcctgaagactaaacccgtcctctactcaaaccag
cagaaccagaaaggaaagctcactatagacttgcctaaagtacagaccactggtcaagtc
agatggtactatatcgtggtggtgccggtgtcccagtcgtcgtcacggctatgggagaac
cctgacgagatggacctggaggagctgttggagtctgacgagggtcctgtcctgcgtcgg
cggcgccaggttgaacccacccggccatacatcgctgccaagctggcctccctgcctgct
acgttcaccctgggagatgagaagagctacaacggcttctacaaccgccccctgcccagt
caccagcggtatctggccttcgttctggctgcactgaaagagcaagagcaggataacagc
gacagacataggacattctcagccagtccgtactcggaccctatccaggtgtctcccaac
gtgtccaggagtgtagagcagccggagatgttgtgggtcctgggtcctgtcctggctgtg
gtgctcatcatcgtcatcgtcatcaccatcctactcatcaagagcaagcaggaaaggaag
cgagcgtctcccctccccaaagacgaccactcaggaggggtgaaggactcactgctgggc
aactcttcagaccctgtagagatgagacgaatcaactgccagacaccaggtcccagtact
cagcgctgtcccaacactccaagaatgagagagcaccctcccatcactgtgtgtgatctg
gcggaccacatagagaggctgaaggccaacgacggcctgcgcttctcacaggagtacgag
tccatagatcctgctcagcagttcacctgggagaattccaacatggaggtgaacaaacca
aagaaccgttatgctaacgtcatagcatacgaccactccagagtcgtcctgacgtctgtc
gatgctgttcctggtagtgactacatcaacgccaactacatagatggatacaggaaacag
aacgcctacattgctacgcagggcccgcttcccgaaaccctcagcgacttctggaggatg
gtgtgggagcagagggcgcacactatagtcatgatgacaagactagaggagaagtcacga
gtgaagtgtgaccagtactggccagtgagagggacggagacctacggtatgatacaggtc
agcatgttggatactgtggagctggctacctacagcgtacgcacctttgccctctacaag
aatggttccagtgagaagcgtgagattcgtcagttccagttcatggcctggccagaccat
ggggtaccagagtaccccacacccatcctggccttcctacgacgggtcaaagcctgcaac
cccccagacgctgggccaatggtggtacactgcagtgcgggcgtgggtagaacaggctgc
ctgatcgtgatcgaggccatgctggagcgtatgaagcatgagaagtcagtggatatctac
ggtcatgtgacgtgcatgagagctcagcggaactacatggtgcagacggaggaccagtac
gtcttcatccacgaggccctgctagaggcagccacctgtggcctcactgaggtccccgca
cgcaacctgtacgcacacatccagaaactcacccagccgcccaccggggagaccgtcact
gccatggagctggagtttaagagactggccaactccaaagcccacacctccaggttcatc
agtgccaacctgccctgcaataagttcaagaaccggctggtgaacatcatgcccttcgag
tcgacacgcgtgtgtctgcagcctatcagaggagtggaggggtctgactacatcaacgcc
agctgcatcgacggctacagacaacagaaggggtacttggccacccagggccctctggct
gaaactactgaagacttctggaggatgctgtgggaacataactctaccatcgtagtgatg
ctcaccaaactcagagagatgggacgggagaagtgtcaccagtactggccagcggagcgc
tcagccaggtaccagtactttgtggtggaccccatggccgagtacaacatgcctcagtac
atcctcagagagttcaaagtcaccgacgccagggatggccaatccaggacgatccgccaa
ttccagttcactgattggccagaacaaggagtgccaaaaaccggggaagggttcatcgat
ttcattggccaagtgcataaaaccaaggagcagtttggacaggacggaccaatcactgtt
cactgcagtgctggggtgggcaggacaggagtcttcatcactctgagtatcgtgttggag
aggatgaggtacgaaggggtggtggacctcttccagaccgtcaagacgctacggacccag
agacctgccatggtgcagacagaggaccagtatcagctgtgctacagggcagctttggag
tacctggggagctttgaccactatgcaacgtaa
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integrated database retrieval system
