Coregonus clupeaformis (lake whitefish): 121535776
Help
Entry
121535776 CDS
T08357
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121535776 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121535776 (kdm2aa)
04121 Ubiquitin system [BR:
cclu04121
]
121535776 (kdm2aa)
03036 Chromosome and associated proteins [BR:
cclu03036
]
121535776 (kdm2aa)
Enzymes [BR:
cclu01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
121535776 (kdm2aa)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
121535776 (kdm2aa)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
121535776 (kdm2aa)
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
121535776 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
121535776 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
F-box
Cupin_8
Roughex
BUD22
Motif
Other DBs
NCBI-GeneID:
121535776
NCBI-ProteinID:
XP_041698978
LinkDB
All DBs
Position
21:complement(58121748..58144326)
Genome browser
AA seq
1311 aa
AA seq
DB search
MGGFAVATQDRSSYPENVSQQCKAPGVKTQQKPGGRLRRLAPSTVLEQFCSIMVRSGTRR
RYHDDGISDDEIEGKRTFDLEEKLRSERFTSDRVKRMEGKDLTFEYIQRGGLRDPIIFEK
PDGLGIKMPDPDFSVNDVKIFVGSRRMIDVMDVSTQKGIEMSMAQWRRYYETPPSQRDKL
YNVISLEFSHTKLENLVQRPASVDIIDWVDNMWPRHLKERQRDSTNSITDMQYPKVQKYC
LMSVQGCYTDFHIDFGGSSVWYHILRGGKVFWLIPPTPQNLELYEDWVLSGKQGDIFLGD
KAQDCQRIELKQGYTFMIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLNIYSIEDRTRV
PAKFRYPFYYEMCWYVLERYLFSLTNTSYLTPEFQKHSLGIGLMRDPSTCESVNGHTQEE
AEEDEEEAPPTRGSMPGVKVHLTPFELEGLWNLLGKLESLPSQKNCVPAGIHNAPALLHD
IRALLKEHANDIPKLSYTGKPIVKWPKRPSWYQPPPPPPPVARPKLSATVVTPRPQKPAS
SMSVLRRRRVRCKRCEACVRTECGDCNFCRDMKKFGGPGKLKQTCVLRQCLAPGLPLSVV
CEICGEGNQEGGEGPVFALTLMECSNCAQIAHPACLKVTGDGVVNTDLPSCWECPKCVLG
ITDTEVKGDKNKMLHAKRKSSSFLDGRIAKIYRRRGHSRDDDDSGSDDDDDDDDDDDDDG
SRGGGGGAGRKMSGPHPRGSGSASRRGYGTGRRGIWRGSSHRGAGRGSGLAPHSSLKMRR
GRGGLGVGRGDREGGRRERGGRVRLRGGTRMQRRRDESEEDDDDDDDDDDDDEDDDSEED
QQHHRHRQRRRRRRTEDEEDDDEEEEDSSARDLEGEDEEMDDVDDEDEDEEEDSEPEPPV
LLVSDLNDDLLNGSYLTVTLQRPPRAKRHPGSIVPKLEAAMSPRTHGGGPGYIQRKNLGK
TRHKNGTGAAGNGLAQPAKNPVGRPPRHRINNPHGDTADRERERDTASLSSSDSSASPTP
PPHSSHSPSSLLSLPSFKDVGNEKGGEKEVWVAVFRYLRRAELASCMTVCKAWYKWSCDK
RLWSGVDVSRCPSLSSQALQGIIKRQPTSLDLSWTPVSKKQITLLIHRLPGLKELMIAGC
SWSSMSALSTPSLPCLRTLDLRWAEGVKDTQIRDLVTPPGCDSRSRLRGCVVLRLAGLDI
SDSTLRLILRHMPLLERLDLAHCRDLTDQSVCLLTAAGTHTRNTLTEINLAGCNKLTDGC
LAYLKRASGLALLDLRGCKGVSRRGCEGFISDLSHCVLFCMTEEKLIQRIS
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgggcggctttgctgtagcaacccaagaccgaagtagctacccagaaaacgtgtctcag
caatgcaaagctccgggagtcaagacacagcagaagccaggaggcagactacgcagactg
gcaccgtcgaccgtccttgaacagttctgctcaatcatggtgcggtcgggcacgcggcgg
cgctaccatgacgatggtatctcggacgacgagatcgaagggaagaggacctttgacctg
gaggagaagttgaggagcgagaggttcacctcagacagggtcaaacgcatggaggggaaa
gacctcacgtttgagtacatccaaagaggtgggttgagggacccgatcatctttgagaag
ccagacggactgggcatcaagatgccagatccagacttcagtgtgaacgacgtgaagata
tttgtcggcagcaggcgtatgatcgacgtgatggatgtaagcactcagaagggtatagag
atgtctatggcccagtggagacgttactacgagacgcccccctcccaaagggacaaactc
tacaacgtcatcagcctggagtttagccacaccaagctggagaacctggtccagaggccc
gcatcggtggacatcatagactgggtggacaacatgtggcctcggcacctaaaggagaga
cagagagactccaccaattccatcacagacatgcagtaccccaaagtgcagaagtactgt
ctaatgagtgttcagggctgctatacagacttccacatagacttcggaggttcctcagtc
tggtaccacatactgcggggaggcaaggtgttctggctgatcccgcccacgcctcagaac
ctggagctgtatgaggactgggtgttgtcagggaaacagggagacatcttcctgggagac
aaggcccaggactgtcagaggatagagctgaagcagggctacaccttcatgatcccctca
ggttggatccatgcggtctacactccagtggacaccctggtgtttgggggaaacttcctc
cacagcttcaacatccccatgcaactcaacatctacagcatcgaggacaggacacgggta
ccagctaagttccgctacccgttctactatgagatgtgttggtacgtgttggagagatac
ctcttcagtctgaccaacacctcctacctcacacctgagttccagaaacactccctgggc
atcggtctgatgagagacccctccacctgcgagtcagtcaacggccacacccaggaggag
gcagaggaggatgaagaggaggctcccccaacccggggctctatgcctggggtgaaggtt
cacctgacgcccttcgagttggaggggctgtggaacctgctggggaagctggagtctctg
ccctcacagaagaactgtgtcccggcaggcatacacaatgctcccgcactgctgcacgac
atcagggccctgctgaaggagcatgctaatgacatccccaaactgtcctacactggaaag
cccatcgtcaagtggcccaagaggccgtcgtggtaccagccccctccccctcctcccccg
gtggctcgtcccaagctgtccgccacggtggtgaccccgcgaccccagaagcccgcctcc
tccatgtccgtgctgcggcggcggcgtgtccggtgtaagcgctgcgaggcgtgcgtcagg
acggagtgcggggactgtaacttctgcagggacatgaagaagttcggagggccggggaaa
ctcaaacagacctgcgtgctccgacagtgtctggcgccgggtctgcccctgtcagtggtg
tgtgagatctgtggagaggggaaccaggagggaggagaggggcctgtcttcgccctcacc
ctcatggagtgttccaactgtgcccagatagcccaccccgcctgcctcaaggtaacaggg
gatggtgtggtgaatacagatctgcccagctgctgggagtgtcccaaatgtgttctggga
atcaccgacacagaggtgaaaggggacaagaataaaatgttacacgcgaaacgcaagtct
tcttcgtttctcgacggccgcatcgccaagatctaccgtcgccgcggtcacagccgagac
gacgacgactcgggcagcgacgacgatgatgatgatgatgatgacgatgatgatgatggc
tccaggggcggaggaggaggcgcgggacggaagatgtccgggccacacccccgcggcagt
ggctccgcctctcggagaggctacgggactgggaggcggggcatttggagaggctcctcc
cacagaggggcgggccgcgggagcgggctggcccctcactcctcccttaagatgaggcgc
ggcagaggagggctgggggtggggcgaggtgacagagagggggggcgcagggagaggggc
gggagagtgcgcctccggggcggcaccaggatgcagagacgcagggacgagtcagaggag
gacgatgatgatgacgatgatgatgatgacgatgatgaagatgacgacagcgaggaagat
cagcagcatcatcgccaccggcaacgccgtaggcggaggagaacggaggacgaggaagac
gatgatgaagaagaggaagacagctcggcccgggacctggagggggaggatgaggagatg
gacgacgtggacgatgaagacgaggatgaggaagaagactccgaaccagagcctcccgtc
ctcttggtgtctgaccttaacgacgacctcctaaacggctcgtacctgacagtgacccta
cagcgcccccccagggcgaaacgccacccgggctccatcgtgcccaagctggaggccgcc
atgtctcccagaacccacggcggcggtccaggttacatccagcgtaaaaaccttgggaag
acgcggcacaaaaatggcacgggcgccgccggcaacggcctggcccagcccgccaagaat
ccagtcggccggccgcctcgtcaccgtatcaacaatccccacggcgacacagcagacagg
gagagagagagggacactgcctctctgtcctcctctgactcctccgcctcccccacccct
cctccccactcctcccactctccttcctcgctcctgtcgctgccctccttcaaggatgta
ggaaacgagaagggaggggagaaggaggtgtgggtggcggtgttccgttacctgcgcaga
gccgagctggctagctgtatgactgtctgtaaggcctggtacaaatggagttgtgacaag
cgtctgtggagtggtgtggatgtgtcgcggtgtccctccctctcctcccaggccctgcag
ggcatcatcaaacgccagcccacctccctggacctctcctggacccccgtgtccaagaaa
cagatcaccctgctcatacaccgcctgccaggtctgaaggagttgatgatagcaggttgc
tcctggtcgtccatgtcagccctgtccacccccagcctgccgtgcctccgtaccctggac
ctgcgctgggcagagggggtcaaagacacccagatcagggacctggtcacaccaccaggt
tgtgacagtcggtctcggctgcgtggctgtgtggtgctgcgtctagccggcctggacatc
agtgactccaccctgaggctgatcctcagacacatgcccctgctagagaggctggacctg
gcccactgcagagacctcactgaccagtccgtctgcctgctcaccgccgccggcacacac
acacgcaacacactcaccgagatcaacctcgcaggctgtaacaagctgacggatggctgt
ctggcgtacctgaagagggcgtctggcctggcgctgctagacctgcggggctgtaaaggt
gtgtcgcggcggggctgcgagggcttcatctcagacctctctcactgcgtcctgttctgt
atgacagaggagaaactcatccagaggatatcgtaa
DBGET
integrated database retrieval system
