Coregonus clupeaformis (lake whitefish): 121537216
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Entry
121537216 CDS
T08357
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121537216
04020 Calcium signaling pathway
121537216
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121537216
09153 Circulatory system
04260 Cardiac muscle contraction
121537216
04261 Adrenergic signaling in cardiomyocytes
121537216
04270 Vascular smooth muscle contraction
121537216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121537216
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121537216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
D123
Motif
Other DBs
NCBI-GeneID:
121537216
NCBI-ProteinID:
XP_041700839
LinkDB
All DBs
Position
24:10344928..10376814
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AA seq
2118 aa
AA seq
DB search
MYARKARTGPEPCNLEANGGGEKGNTLKARNLPFDIFILLAIFANCVALGVSKPFPEEDS
NSTNHNLEQVEYIFLVIFTIETFTKILAYGLVMHPSAYIRSGWNLLDFVIVVVGLFSVVA
EGTADHKPGDSHHAAGKPGGLDVKALRAFRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLH
IGLLVMFVIIIYAIIGLELFLGRMHKTCFYMGTELNVDDDPTPCAFAGNGRDCVGNGTEC
RGPWEGPNGGITNFDNIFFAMLTVFQCITMEGWTDVLYWMNDAIGFEMPWVYFVSLVIFG
SFFVLNLVLGVLSGEFSKEREKAVARGELQDAQNKKQMEEDMCGYMDWLIEAEDVDEEGN
KRAAVAKKKMMKKFGWYKHSEDGESDSDSEFGAYLDDDNGCCASLMAKMMANSFCDQLCQ
LNHAFRKNCRVAVKSQNFYWLVLLLVFLNTAASASEHYGQPKWLTEMQERANKILLMLFT
LEMLLKMYSFGFQIHFLALFNRFDCFVVCGGILETVLVELQIIPPIGISVLRCVRLLRVF
KVTRHWAALSNLVNSLLNSMKAICSLLLLLFLFLIIFSLLGMQLFGGKFNFDETQMKRST
FDTFPQALLTCFQILTGEDWNAVMYDGIMAYGGPVFPQMIVCIYFVSLFVVGNYILLNVF
LAIAVDNLAGDGGKKKVEEKKEEEEDWDEDDDKEEDAANEMDDWEENEELRAIEGLEGIM
PVKPEFSAPKEKIEPIPDGSSFFILGKRNCLRVACHNLIHHSYFTNLILVFIIASSISLA
AEDPIRAHSFRNNMLGYADYAFTSIFTVEIILKVTVFGAFLHPGSFCRNAFNLLDLLVVS
VSLASFFLHSSAISVVKIFRVLKVLRPLRAINRAKGLKNVVQCVFVAIKTIGNILIVTTL
LQFMFACIGVQLFKGRFYSCTDEAKHTPYECMGTFVVYKDGDMNHPMVRERIWQNSEFNF
DNVLQGMLALFTVSTFEGWPQLLYKAIDANAANHGPIYNYRVEISIFFIIYIIIIAFFMM
NIFVGFVIITFREQGESEFKNCELNKNQRQCVQYALKAKPIKIYIPRNPSQLKFWKIIAS
SQFEYIMFVLILLNTLTLAVQHYEQSKTFNAVMDILNLIFTALFTIEMVIKLLALRTHQY
FIDAWNTFDALIVVGSVLDIMVSELSGGDEDGEAIEAAAKVAAVAVPGAPPGAKKESGKV
SITFFRLFRVLRLVKLLSKGEGIRTLLWTFVKSLQALPYVGLLIAMIFFIYAVIGMQTFG
KIAIDDNSQINRNNNFQTFFMSVLLLFRCATGEQWQEIMLAALPGRRCDPESDFEPGEES
MCGSNLAYIYFISFFMLCAFLIINLFIAVIMDNFEYLTRDWTVLGTHHLDEFKRVWSDYD
PEATGRIKHIDVVTMLRRIQPPLGFGKLCPHRVACKRLVAMNVPLHSDGTVTFNATLFAL
VRTSLKIKTDGPVDQDNEELRAIIKKIWKRTKPKLLEEVIPPPRGEEVTCGKFYASFLIQ
DYFKKFRKRKERERKKKGKDKKDSLQAGLRSLQALAPELHLALAMEGEEEEGMEGELDEY
FFKNENVFEDPGTSATNTLSTTPMPADMEEGTTTVFMEPFVEPTIFSDVVTEQPLTASER
PESTLSSFDVVIEQPTRSEALPPPEEAPAPPPPHPPPAPSPPKAPSPPQPAPAPSPPKAP
SPPKAPSPPQPAPAPSPPKVASPPQMVAQTQPQIVLAPPEPEAPQIVLAPPEPEAPQIVL
APPEPEAPQIVLEAATATPQPEPVMEGRGGETYAAQQVYYPQYPVGLLTNDGYVYQEQPA
AFHIPSEYMQSHAPNFTNGSVAGGPYGNGNGMHGNGYNGVMNGMNGGSMSDYTGNGYIGN
GYSGNGYNGNGLEPYVRRRVLPPTPAGRKPPSFNIQCLRAQHSVGDIPIPGTYESNSPPC
RSRLTLDSRRNSVSSTSSASWANNGGGPAGSMPGAGVSAASSAAAKRGRLLYAPLMLVDE
AGGTQQLWGDRTQTTSSLPAVATRPSGWYPGAPTLPMPTPQNRSYTNGRVPSQISQRLIE
KGSANSLVESILISEGLGLYARDPKFVNFAKREIADACNMTIDEMENAATDLLTRSTGQP
IGRFEEELADEMNCVISY
NT seq
6357 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcgcgtaaagcgcgcaccggacccgagccatgcaacctggaagcaaatggagga
ggtgagaaagggaacactttgaaagccaggaacctaccttttgatattttcattctactt
gctatttttgccaattgtgtggccctgggtgtatctaaacccttccctgaggaggactcc
aattcgaccaaccacaacctggaacaagtagagtacatcttcctggtcatcttcaccatt
gagaccttcactaagatcctggcctatggcttggttatgcaccccagcgcctacatccgc
agtggctggaatttgcttgattttgtcatcgtcgttgtcgggttgttcagtgtggttgct
gaggggacggccgaccacaagcctggagattcccaccatgcagcaggcaaaccaggagga
ctggatgtcaaagctcttagagcctttagggtgctgcgaccccttagactggtgtctgga
gtgcccagtctccagattgtcttgaactccatcatgaaagccatggttcccctgctccac
attggtctactggtcatgtttgtcatcatcatctatgccatcatcggtctggagctcttc
ctcggcaggatgcacaagacctgtttctacatgggcactgaactgaacgtagatgatgac
cccacaccatgtgcatttgctggaaatgggcgggattgtgtgggcaacgggacagagtgc
agaggaccgtgggaggggcctaacggtgggatcaccaactttgacaacatcttttttgcc
atgttgactgtgttccagtgtatcaccatggagggctggaccgatgtgctctactggatg
aatgatgcaattggctttgagatgccctgggtgtactttgtctctctggtcatctttggc
tcgtttttcgtactcaaccttgtattgggagtgttgagcggagagttctccaaggaaaga
gagaaggctgtggctcgtggagagctgcaggacgcccagaataagaagcagatggaggag
gatatgtgtggctacatggactggctcatcgaggccgaggatgtggatgaggaaggaaac
aagcgtgctgctgttgccaagaagaaaatgatgaagaagtttggctggtataaacacagc
gaggacggagaatcggattcagactctgaatttggagcatatttagacgacgacaatggc
tgctgcgcatctcttatggctaaaatgatggccaacagtttctgtgaccagctatgccaa
ctgaaccatgccttccgaaaaaactgtcgtgtagcagtcaaatcccagaacttctattgg
ctggtgcttcttctggtttttctcaacactgcagccagcgcctctgaacactacggccag
cccaagtggctcaccgagatgcaggagcgggccaataagatcctgttgatgttgttcacg
ctggagatgctgttgaagatgtacagtttcggtttccagatccacttcttggctctgttt
aaccgcttcgactgcttcgtggtgtgtggtggcatcctggagacggtcctggttgagttg
cagatcatccctcccatcggcatctctgtgctgcgctgtgtccgcctgctcagggtgttc
aaagtgacacggcactgggcagccctgtcaaacctggtcaattcgctgctcaactccatg
aaggctatctgctccctgctgctcctgctcttcctcttcctcatcatcttctccctgctg
gggatgcagctgtttgggggcaaattcaactttgatgagactcagatgaagaggagcacg
tttgacactttcccccaggccctgctcacctgcttccagatccttacaggagaggactgg
aatgcagtaatgtatgatgggatcatggcttatggcgggccagtcttcccacagatgatc
gtgtgcatctactttgtctccctctttgttgtcggtaactatatcctgctcaatgtcttc
ttggctatcgctgtggacaacttggcaggagatggtggaaaaaagaaagtagaagagaaa
aaggaggaggaagaggactgggacgaagatgatgacaaagaggaagatgcggcgaatgag
atggatgactgggaggagaacgaggagttgagagccatcgagggtctggagggaattatg
cctgtgaagcctgaattttccgctccaaaagagaagattgaacccattccagatggtagc
tccttcttcattcttggaaagagaaactgcctccgagtggcctgtcacaacctcatccac
cactcctacttcaccaacctcatcctcgtcttcatcatcgccagtagcatttctctggct
gctgaggatccaatcagagctcactcctttaggaacaacatgcttggctatgctgactat
gcattcacctccatattcactgtggaaatcatactgaaggtgacagttttcggtgcgttc
cttcatcctggatcgttctgtaggaacgcctttaacctcctggacctgctggtcgtcagt
gtgtcgctcgcgtccttcttcctccattccagcgctatctctgtggtcaagattttcagg
gtactcaaagtgctcaggcctcttcgagccatcaacagagccaagggactcaagaatgta
gtgcagtgcgtgtttgtggcaatcaaaaccatcggaaacatcttgatcgtcacaacgctc
ctccagttcatgtttgcttgtattggagtgcagctcttcaagggcagattctacagttgc
actgatgaagctaaacacactccatatgagtgcatggggacatttgtggtgtataaggac
ggggatatgaatcaccctatggtgagagagaggatatggcaaaacagtgaattcaacttt
gacaatgtgctgcagggcatgctggccctgttcactgtgtctacatttgaaggctggcca
cagctgctgtacaaggccatcgacgctaatgctgcgaaccacggccctatttacaactac
cgcgtggaaatctccatattcttcatcatctacatcatcatcatcgccttcttcatgatg
aacatcttcgtgggtttcgtcatcatcactttccgtgaacagggagaatccgagttcaaa
aactgtgaactgaacaaaaatcaaagacaatgtgtacagtacgctctgaaagccaagccc
atcaagatatatattcccagaaacccgtcccagctaaagttctggaagatcatcgcctcc
agccagtttgagtacatcatgtttgtcttaattcttctcaacaccctcaccttggctgtg
cagcattatgagcagtctaaaacattcaacgctgtgatggacatcctcaacttgatcttc
accgccctatttaccatagagatggttatcaagcttctggctctcagaacacatcaatat
ttcattgatgcttggaacacctttgatgctctgatcgttgtgggcagtgtgctagacatc
atggtctcagagcttagtggaggagacgaggatggagaagccatcgaggccgcagccaaa
gtagcagctgtagccgtacctggagctccgcccggggccaagaaggaaagcggaaaagtg
tccatcacattcttccgtttgttccgagtcttgcgattggtcaagctgctcagcaaaggg
gagggcattcgaaccctcctctggacttttgtcaagtccctccaggccttgccatatgtt
ggtctacttattgccatgatctttttcatctacgctgtgatcggcatgcagacatttgga
aagattgctatagatgacaactcacaaatcaacaggaacaacaacttccagaccttcttc
atgtctgtcctgctgctcttcaggtgtgccaccggagagcagtggcaggagatcatgttg
gcagcattgccagggagacgctgtgaccccgagtcagactttgagcccggggaggagagc
atgtgcggcagcaacctggcctacatctacttcatcagcttcttcatgctctgcgctttc
ctgatcattaacttgttcattgctgtcatcatggacaactttgagtacctgaccagggat
tggactgtactgggtactcatcacctggacgagttcaaacgagtctggtcggattatgac
ccagaggccacgggtcgaatcaaacatatagatgtggtcactatgctgcgcaggatccag
ccaccccttggttttggcaaattgtgcccccatcgtgtggcctgcaagaggctggttgct
atgaatgtgccgctgcacagcgatgggacagtcaccttcaacgctaccctgtttgcgctg
gtcagaacctcactcaagatcaagactgacgggcccgttgaccaagacaatgaggagctc
agggccatcattaagaagatatggaagcggactaagcccaagctccttgaagaggtcatt
ccaccccctagaggggaagaggtgacttgtgggaagttctacgccagcttcctgatccag
gactactttaagaagttccgcaagaggaaggagagggagaggaagaagaagggaaaggac
aagaaagactctctccaggcagggctacggtcactgcaggcactggccccagagttgcat
ctggccttggcaatggagggagaggaggaggagggtatggagggagagttggacgaatac
tttttcaaaaatgaaaatgtttttgaagatcctggcacctctgccaccaatactttatcc
acaactcccatgccagctgacatggaggagggcaccaccactgtcttcatggagcccttc
gtcgagcccacaatattcagcgacgtggtcacagaacagccattgacagccagcgagaga
ccagaatcaactctctcatcctttgatgtggtgattgaacagcccacgagatctgaggcc
ctccctccaccagaagaagcaccagccccacccccgccccacccacccccagccccatcc
ccaccaaaggccccatcccctccccaaccagcaccagccccatccccaccaaaggcccca
tccccaccaaaggccccatcccctccccaaccagcaccagccccatccccaccaaaagtt
gcttctccaccacaaatggttgcccaaacccaacctcaaatagtgttagccccaccagaa
ccagaggcacctcaaatagtgttagccccaccagaaccagaggcacctcaaatagtgtta
gccccaccagaaccagaggcacctcaaatagtgttagaggcagccactgccacacctcaa
ccagagccagtgatggagggaagaggaggtgaaacttacgctgcacagcaggtgtactac
ccacagtacccagtgggcttgctaacaaacgatgggtatgtgtatcaagagcaacctgca
gcattccatatcccgtcagagtacatgcagagtcatgctcctaacttcaccaatgggagc
gttgcaggaggaccctacggcaatggaaacggcatgcatgggaatggctacaatggcgtt
atgaatggtatgaatggaggtagcatgagtgactacaccggcaatggttacataggaaat
ggctacagtggaaatggctacaatggcaacggattggagccgtatgtccggagacgtgtt
cttcctcccactcctgcaggtcgtaagccgccctcctttaacatccagtgtctgcgggca
cagcatagcgtgggtgacatccccatccctggcacgtatgagagtaactcgcccccatgc
agatccagactgacccttgactcccgccgcaacagtgtctcctccacgtcctcggcctcc
tgggccaacaatggaggaggacctgcagggtcgatgccaggagcaggggtgtcagcagca
tcatcagcagccgcaaagagagggcgtctgctctacgcccctctgatgctggtggatgag
gccgggggcacccagcagctgtggggagacaggacacagaccacctccagcctccctgct
gttgcaactaggcccagtggctggtaccctggagccccaacactccccatgcccacgccc
cagaacaggagctacaccaacggcagagtgccctcacagatcagccaaagactcatagag
aagggcagtgctaacagcctggtggagtcgatcctgatatcggaaggcttgggcctctat
gcaagagacccaaaatttgtgaacttcgccaagcgggagatcgctgacgcatgtaacatg
accattgatgagatggagaacgcagccacagacctgctgacccgttctactggacagcca
ataggacgcttcgaggaggagctggctgacgagatgaactgtgtgatttcctactga
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