KEGG   Coregonus clupeaformis (lake whitefish): 121537602
Entry
121537602         CDS       T08357                                 
Name
(RefSeq) class II histocompatibility antigen, B-L beta chain isoform X1
  KO
K06752  MHC class II antigen
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121537602
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121537602
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121537602
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121537602
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121537602
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121537602
  Exosomal proteins of epithelial cells
   121537602
  Exosomal proteins of breast milk
   121537602
SSDB
Motif
Pfam: C1-set C2-set_2 MHC_II_beta YsaB Ig_3 Cna_B
Other DBs
NCBI-GeneID: 121537602
NCBI-ProteinID: XP_041701125
LinkDB
Position
24:3193911..3196473
AA seq 260 aa
MYVLNCFSIHLLLLFSSLSEVVDSSDEDFAHDDAWCGFRSRDLHDMEYIIEHHFNKIMVA
QYNSTTERWTGYTAWGVISAEKWNEDPDEIPRRRTDMEVLCKPYANRIYNTTDMYMVEPN
VTLRLEGPSSDSSLVCSVHFFYPKHIRVTWLRNGQEVTSDVTSTDVMANGHWSYQIQSYL
KYTPTIGERITCMVEHISQTEPKFYDWDPSLPKSEKNKIVIGACGLLLGVVFVAAGLTYR
MTSTGWLFGHIGFRDYGTVN
NT seq 783 nt   +upstreamnt  +downstreamnt
atgtatgtgctgaattgcttctccatccacctgctgctcctcttctcctctctatctgaa
gtggttgattcctcagatgaagattttgcacacgatgatgcttggtgtgggtttagatcc
agagacttacatgatatggagtatattatagagcatcattttaacaagatcatggtggct
cagtacaacagcaccacagagaggtggacaggatacacagcatggggagtgatatctgca
gaaaagtggaatgaggacccagatgagatccccaggaggagaacagatatggaggtgtta
tgcaagccatatgctaatcggatctacaacacaacagatatgtatatggtggagcccaac
gtcacactgaggctagaggggccgtccagcgactccagccttgtgtgtagcgtccacttc
ttctaccccaaacacatcagagtgacgtggctgaggaacggccaggaagtgacctcagat
gtgacctccactgacgtaatggccaatggacactggagctaccagatacagtcctatttg
aagtacacacccacaattggagagagaatcacctgtatggtggagcacatcagccagact
gagcccaaattttatgactgggacccctccttgcctaagtctgagaagaataagatagtg
atcggggcctgtgggctgctgctgggagtggtctttgtagcagctggactgacctacagg
atgacatctactggatggctgttcggtcatattggttttcgtgattatgggaccgtcaac
taa

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