Coregonus clupeaformis (lake whitefish): 121538138
Help
Entry
121538138 CDS
T08357
Symbol
cacna1fb
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121538138 (cacna1fb)
04020 Calcium signaling pathway
121538138 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121538138 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
121538138 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
121538138 (cacna1fb)
04270 Vascular smooth muscle contraction
121538138 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121538138 (cacna1fb)
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121538138 (cacna1fb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Glyco_hydro_cc
Motif
Other DBs
NCBI-GeneID:
121538138
NCBI-ProteinID:
XP_041701861
LinkDB
All DBs
Position
24:5213744..5417949
Genome browser
AA seq
2109 aa
AA seq
DB search
MYEDNRKNNGRNGYTNTDEGEEGGGEGEEEGEEGEEKKGDTEWTEDGADDGGGAKMTRTD
TLYSTTSSTGTQRKKSHHNKKVIQGSDKIQRAPRALYCLKLNNPIRRAALSIVEWKPFDI
FILIAIFANCIALGVSKPFPEEDSNSTNHDLEQVEYVFLIIFTIETFLKILAYGLVMHPS
SYIRNGWNLLDFVIVIVGLFSVVLETMTHKATGEAASTHHVPGKPGGLDVKALRAFRVLR
PLRLVSGVPSLQIVLNSIMKAMLPLLHIALLVLFVIIIYAIIGLELFIGRMHKSCYYIGT
DNFAEDDPVPCAFAGHGRQCVVNGSECRGKWAGPNGGITNFDNFFFAMLTVFQCITMEGW
TDVLYWMNDAIGFEMPWVYFVSLVVFGSFFVLNLVLGVLSGEFSKEREKAQARGDFQKLR
EKQQMEEDLSGYMDWITQAEDMDEFDEDGNRRPTLGDLSDKKKGKFGWFSHSNETHASLP
ASETASTNTENIDEEHTDCCAACCARMMNNSCCRTLRRWNRVCRRNCRVAVKSVTFYWLV
LFLVFLNTICSASEHYDQPDWLTEVQDIANKVLLSLFTVEMLLKMYALGTSQTGYFKAFF
NRFDFFVVCGGITETTLVELEIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVASLLNSM
KSIMSLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDTFSQALLTCFQILTGEDW
NLVMYDGIMAYGGPVFPGMIICIYFVILFICGNYILLNVFLAIAVDNLAGGDGDTKKEEK
KEEGEAKDGEGENGELKIDVDDETEYEEEEEPEQTEEAAAGIQLNVADILPPKEKVTPIP
EGSAFFCLSKTNPIRRGCHFLIHHHIFCNLILVFIILSSCSLAAEDPIRAHSFRNNVLGY
ADYAFTSIFTVEIILKMTVHGAFLHQGSFCRNWFNLLDLLVVSVSLISFFLHSSAISVVK
ILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIMIVTTLLQFMFACIGVQLFKGKF
YRCTDEAKHTPEQCKGTFVVYKDGDVSHPMVRERIWHNSDFNFDNVLMGMMALFTVSTFE
GWPALLYKAIDANGENHGPVYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGES
EYKNCELDKNQRQCVEFALKAQPLKLYIPKNPVQFKFWSFIQSTAFEYVMFVLILLNTVT
LAVQHYEQSKVFSHVMDILNMVFTGLFTVEMLLKLLALRLRHYFIDAWNSFDALIVVGSV
VDIVVTEFSSSDDSSRVSITFFRLFRVMRLVKLLSKGEGIRTLLWTFVKSLQALPYVALL
IAMIFFIYAVIGMQTFGKIAMQDYTQINRNNNFQTFPQAVLALFRCATGEAWQEIMLASL
PGKRCDPESDYLPGEEFTCGSNFAIVYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSI
LGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNM
PLNSDGTVTFNATLFALVRTALKIKTEGNPDQENEELRIIIKKIWKRMKPKVLDEVIPPH
EEEDVTVGKFYATFLIQDYFRKFRKRKEQGDLEEADPNNTSAALQLCQAGLRTLQDLGPE
MRMAMSADLEEEEEEGMEEEPEEDDSHYKTDNGYATEGKDRRGSMATTITGGGGMPRESL
SNGGLAHRGSPNGGGLEQDELGRGDNVRSSLNHPRRHSSVKNGLVDQPAMSRRNSNKYSS
RRDNRGDRYSPVRGRNGGMDGGEESYGGEEGYYDEDNESLDPRDRLRYPDDPPLYPGQRD
AHAPSNAAYGNNYGNGNGNGYGDGRRTARRRLLPATPTGNVTTPGLLYTGHDGGELSGRK
PSFNIQCLRRQDSNDDLPIPGTYHQNSPPCRARTQVTTQTYGSYESRRSSSRSSTGSSAS
WANPCPRRGRLLYAPLILVEEEGVGGSGGSGIWGDKKGGGANVTAATSRPGPAGWYTGPP
GPSEVSQAPYRAYTTLRVPTQLSPHYSDKRGSADSLVEAVLISEGLGLYAKDPKFVAFAK
REIADACHMTIDEMESAASDLLSRGSGGGGGGGFLNNPDLGTLYSDEEPIRTCRDEEDLA
DEMTCVTSF
NT seq
6330 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggacaatcgcaaaaacaatggccggaacgggtacaccaacacagatgaagga
gaggagggtggaggagagggagaagaggagggcgaggagggagaagagaagaaaggagac
acggagtggacggaggatggcgcggatgacggcggaggagcgaagatgacgaggacagac
acgctctactccacgaccagctccacggggacccagaggaagaagagccatcataataag
aaagtgatacaggggtctgacaagatccagagagcccccagggcgctctactgcctgaaa
ctcaacaaccccatacgccgggccgcgctctccatcgtagagtggaaaccctttgacatc
ttcatcctgatagccatctttgctaactgtatagcgctgggggtgtccaagcctttccct
gaggaagactccaactctaccaaccacgacctggaacaagtggaatatgtgtttctgatt
atcttcaccattgagacgtttctgaagatcttggcttatggcctggtgatgcaccccagc
tcctacatacgcaacggatggaacttgctagactttgtcatcgtcatcgtggggctgttc
agtgtcgtcctggagacgatgacccataaggccacgggcgaggcggcgtcgactcaccat
gtaccagggaagcctggaggtctggatgtcaaagctctccgagccttcagagtactgagg
cccctacggctggtctcaggagtacctagtctgcagatcgtattgaactccatcatgaag
gccatgctgcctctcctccacatcgccctgctggtgctgtttgtcatcataatctatgcc
atcatcggcctggagctgttcataggacggatgcacaagtcctgctactacattggcaca
gataactttgcagaggatgaccctgtgccctgtgcatttgcgggtcacggtcgtcagtgt
gtagtgaacgggtctgagtgtcgaggaaagtgggctggacccaacggaggaatcaccaac
tttgacaatttcttcttcgctatgctgacggtgttccagtgtatcactatggaggggtgg
accgacgtactctactggatgaatgatgccatagggtttgagatgccctgggtttacttt
gtcagtctggtggtcttcggctccttcttcgtcctcaacctggttttgggtgtgttgagt
ggagagttctccaaggagagagagaaggcccaggcgcgaggggacttccagaagctgaga
gagaaacaacagatggaggaggatctgtctggatacatggactggatcacacaggctgaa
gacatggatgagtttgacgaggacggaaacagacgtccgaccctgggggatctgtcagac
aagaagaaagggaagtttggctggttcagccactcaaacgaaacacacgcaagtcttcca
gccagtgagacagcctctaccaacacggagaatattgatgaagaacacactgattgctgt
gccgcctgctgcgctcgaatgatgaataacagctgctgtcggacgttgcggaggtggaac
cgggtgtgtcggaggaactgccgcgtggcggtcaagtcggtgacgttctattggctagtt
ctgtttctggtgttcctcaacaccatctgcagcgcctcagaacactacgaccagccagac
tggctcacagaggtccaggacatagccaacaaagtgctgctgtctctgtttacggtggag
atgttgctgaagatgtatgctctggggacgtctcagaccggctacttcaaggcctttttt
aaccgcttcgacttcttcgtggtgtgtggaggcatcacagagaccactctggtggagctg
gagatcatgccgcctctcggcatctccgtgcttcgctgcgtccgactcctcaggatcttt
aaagtgacacgtcactggacagctctgtccaacctggtggcctctctgctcaactccatg
aagtccatcatgtccctgctcctcctcctcttcctcttcctcatcatcttcgctctgctg
ggcatgcagctgttcggagggaagttcaacttcgacgagacccagaccaagaggagcacc
ttcgacaccttctcccaagccctgctcacctgcttccagattctaacaggtgaggactgg
aacttagtgatgtatgatggcatcatggcgtacggagggcctgtcttccctgggatgatc
atctgtatctactttgtcatcctcttcatctgtggtaactatatcctgctgaacgtcttc
ttggctatcgctgtggacaacttagcaggaggagacggtgacacaaagaaagaagagaag
aaagaagagggggaagcaaaggacggggagggagagaatggagaactgaagattgacgtt
gatgatgagactgagtatgaggaagaggaggagcctgaacagacagaagaggcggcagcg
ggcatccagctgaacgtagcagacatcctccctcccaaggagaaggttacaccaatccca
gagggcagcgccttcttctgtctcagcaagaccaacccgatccgtcggggctgccacttc
ctgatccaccaccacatcttctgcaatctcatcctggtcttcatcatcctcagcagctgc
tctctggccgcagaggaccccatcagagcacactccttcaggaacaatgttctgggctat
gcagactatgccttcacctcgatattcacagtggagatcatactgaagatgacagttcat
ggggcgttcctccaccaaggttcattctgtaggaactggttcaacctgttggatctcctg
gtggtctctgtgtctctgatctccttcttcctacattcgagtgccatctctgtggtcaag
attctcagggttctcagagtgctcaggcctcttcgagccataaacagagccaagggactg
aagcatgtggtccagtgcgtgtttgtagcgatcaagaccatcggtaacatcatgatcgtc
accactctactacagttcatgttcgcctgcatcggagtccagctcttcaagggtaaattc
taccgctgcacagatgaggctaaacacacaccagagcagtgcaagggaacctttgttgtg
tataaggatggggacgtgagccaccccatggtgagagagaggatctggcacaacagtgac
tttaactttgacaacgtcctgatgggcatgatggctctgttcacagtgtccaccttcgag
ggctggccagcactcctgtataaggcgattgatgctaatggagagaaccatggtcctgtc
tataactaccgtgttgagatctccatcttcttcatcgtctacatcatcatcattgccttc
ttcatgatgaacatcttcgtcggcttcgtcatcatcaccttcagagagcagggagagtct
gagtataagaactgtgagctggacaagaaccagagacagtgtgtcgagtttgctctgaag
gcccagcctttgaagctgtacattccaaagaacccagtgcagtttaagttctggtccttc
atccagtctacagcgtttgaatacgtcatgttcgttctaattctcctcaacactgtcaca
ttggctgttcagcattatgagcagtccaaggtgttcagtcatgtgatggacatcctcaac
atggtcttcactggtctcttcactgtagagatgctactcaagctgctggctctacgactc
aggcattatttcatagatgcctggaactcttttgatgctctgatcgtggtgggcagtgtc
gtggatattgtggtgacagaattcagcagctctgatgacagctccagagtgtccatcacg
ttcttccgtctgttccgagtgatgcgattggtcaaactgctgagcaagggggagggtatt
cggacgctgctctggacctttgtcaagtccctccaggccctgccctacgtagcccttctc
atcgccatgatcttcttcatctatgcggtcatcggcatgcagacgtttgggaagatagcc
atgcaggactacactcagatcaacaggaacaacaacttccagacgtttcctcaggcagta
ctagctctattcaggtgtgctacaggggaggcgtggcaggagatcatgctagccagtctg
ccaggtaaacggtgtgacccagagtcagactacctgcctggggaagagttcacatgtgga
agcaacttcgctatcgtctacttcatcagcttcttcatgctgtgtgctttcctgattata
aatctgtttgttgctgtcatcatggacaactttgactatctaacccgtgattggtccatt
cttgggcctcatcacctggatgagttcaagaggatctggtccgagtatgaccctgaggcc
aagggtcgtattaaacatctagatgtcgtagctctgctgagaaggatccagcctcctctg
ggcttcggaaagctctgtcctcaccgcgtggcgtgcaagcgtctggtggccatgaacatg
cctctgaacagcgacggcaccgtaacgttcaacgccactctgttcgccctggtcagaacc
gccctgaagatcaaaaccgagggtaacccggaccaggagaatgaggagctgaggatcata
ataaagaagatctggaagaggatgaagcccaaggttctggacgaggtcatccccccacac
gaggaagaggatgtgacggttggtaagttctacgccaccttcctgattcaggactacttc
aggaagttcaggaagagaaaagagcaaggagacctggaggaggccgacccaaacaacact
tctgctgcgctacagctgtgtcaggcgggtctgcgtacgctgcaggacctggggccggag
atgaggatggccatgtcagctgacctggaggaggaagaggaggagggcatggaggaagag
ccagaggaagatgattcccactataagactgataacggctatgccactgagggtaaggat
aggcgtggctccatggccaccaccattactggaggaggaggtatgcccagggagagtctc
tccaacgggggtctggcacaccgaggctcccccaacggaggaggtctggagcaggatgag
ctgggacgaggagacaacgtgaggtcttcgctcaaccaccctcgtcgtcattcttccgtt
aagaacggactggtggaccaaccggccatgagcagaaggaattccaacaagtattcaagt
agaagagacaacagaggagacagatattctcctgtccgaggtcgtaacggagggatggat
ggaggagaggagagttatggaggggaggagggttactatgatgaggataacgagagccta
gaccctcgtgacagacttcgttaccctgacgaccctcctctgtaccctggtcagcgtgac
gcccacgcccccagcaacgctgcctacggtaataactatggcaacgggaacgggaatggc
tatggagatggacggaggaccgcgaggagacgcctcctccccgccacacctaccggtaac
gtcactacaccagggctgctttacacggggcatgacggtggggaactatcaggtcgtaag
ccatcctttaatatccaatgtctgaggaggcaggacagcaatgatgacctccccatccca
ggaacctaccaccagaactctcccccctgtcgggcacgcacacaggtcaccacacagacg
tacggcagttacgagtctcgtcgcagcagcagccgttcctcaacaggttcctctgcctcc
tgggctaacccttgccctcgccgaggtcgcctcctctatgcccctctcatcctggtcgaa
gaggagggggttggggggagcggcggctccgggatctggggggacaagaagggtggaggg
gccaacgtgacggctgccacctcccgacctggtcctgccgggtggtacacagggccccct
ggcccctcagaagtctcccaggcaccctacagggcctataccacactgagggtccccact
cagctcagccctcactacagcgacaagagaggcagtgctgatagcctggtggaggcagtg
ctgatctcggaggggctgggtctgtacgccaaggaccccaagtttgtggccttcgccaaa
cgggagattgctgacgcgtgtcacatgacaattgacgagatggagagtgcggccagcgac
ctgctgagtcggggaagcgggggcggagggggtggcggcttcctgaacaaccccgacctc
ggaaccctgtacagcgacgaggagccaatcagaacgtgccgcgacgaagaagacctggcg
gacgagatgacctgcgtcacttccttctga
DBGET
integrated database retrieval system
