Coregonus clupeaformis (lake whitefish): 121539254 Help Entry 121539254         CDS       T08357                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04115   p53 signaling pathway cclu04145   Phagosome cclu04148   Efferocytosis cclu04350   TGF-beta signaling pathway cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     121539254   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121539254  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121539254    04148 Efferocytosis     121539254   09143 Cell growth and death    04115 p53 signaling pathway     121539254   09144 Cellular community - eukaryotes    04510 Focal adhesion     121539254   09142 Cell motility    04820 Cytoskeleton in muscle cells     121539254  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121539254   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121539254 Membrane trafficking [BR:cclu04131]  Endocytosis   Phagocytosis    Opsonins     121539254 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121539254 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_ADAMTS EGF_3 TSP1_CFP_C cEGF Laminin_G_3 TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  121539254 NCBI-ProteinID:  XP_041703540 LinkDB All DBs Position 25:complement(9507277..9516760) Genome browser AA seq 1172 aa AA seqDB search MKLTGVFLLLVLWNCEGSRLAESGDDNSVYDLFELVKVKKRHQGVTLVKGADPYSPAYKV LNADLIPPVPEISFRDLIDSVQAERGFLLLVNFKQFKKTRGSLLTVEKNDGSGPIFEIIS NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMEV PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNVRFVFGTTLEAIMRNKGCQSSATLTDV MTLDNPVNGTSPAIRTDYTGHKTKDIQQVCGYSCEDIASMFNELKGLGVVVKQLSNELNR VNKESNLLMNQMNIHSRVCLHNGIVHKDTDEWTVDGCTECTCQNSATVCRKISCPLMPCA NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG RETEVCQKSPCPIDGVWGPWSLWDTCSVTCGGGLQTRQRLCNNPTPIYGGKECQGDAKTS QLCGKEDCPIDGCLSNPCFAGTKCTSFHDGSWKCDACPVGYTGDGINCKDIDECKEVPDA CFTLNGVHRCENTEPGYNCLACPPRYSGQQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDRDDVGDRCDNCV HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNILDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN ALWHTGDTAGQLRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaaactgacaggagtatttctccttttggtgctttggaattgtgagggcagcaggttg gcagagagtggagatgataacagtgtatacgacctattcgagcttgtgaaagtgaaaaag aggcaccaaggagttaccttggtaaaaggcgcagatccatacagcccagcctataaggtc ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattca gtacaagctgagaggggattccttctgcttgtcaacttcaagcagttcaagaaaaccagg ggcagtcttttgactgtggagaagaatgacggatcaggaccgatattcgaaataatttct aatggcaaggcgcaaactctggatgtggtatactctaccgggaacaagcaacaggtagtg tccatagaagatgcagatctagcgaccggacattggaagaatatcacgctgttcattcag gaggatcgtgcccagctgttcgtggggtgtgaagagatcaatatatcagaaatggaagtg cccatccaaaaggtcctgacgcatgaggttgctgacatcgcccgtctgagaatcggaaaa ggagctgtgaaagacagatttatgggagtgcttcagaacgtgcgcttcgtttttggaacc actttggaggcaatcatgcgcaataagggatgccaaagctctgcaacgttgactgatgtc atgaccctggacaacccagtcaatgggactagcccagcaataaggactgattacaccggc cacaaaaccaaagatattcagcaggtctgcggttattcctgtgaggatattgccagcatg ttcaatgagctcaagggactcggtgtggttgttaagcagctgtcaaacgagcttaacaga gtgaataaggagagcaatctgctcatgaaccagatgaacattcatagtagggtctgtctt cacaacggtatcgttcacaaggacacagacgagtggaccgtggacggctgcacagagtgt acatgccagaactctgcaactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc aatgccaccgtgcccgatggagagtgctgcccacgttgtggaaccccgagtgactatgct gaggatggctggtccccctggtctgaatggactcattgttctgtgtcatgtggacggggc atccagcagcgaggtcgctcatgcgaccgcatcaacagcaactgcgagggcacctctgtg cagacccgcgactgctaccctcaggaatgtgacaagcgcttcaaacaggatggtggctgg agccactggtctccctggtcctcctgctctgtgacctgtggtgaaggagtcatcacccgc atccgcctttgtaactccccaactccccagatgggaggcagagactgccaaggacagggc agagagaccgaggtctgtcagaaatccccttgtccaattgacggagtctggggaccctgg tctttatgggacacctgctctgtcacctgtggaggtggactccagactcgccagcgtctt tgtaacaaccccacccccatatacggagggaaggaatgtcagggtgacgccaaaacatcc caactgtgtggcaaagaggactgccctattgatggctgtctgtccaacccctgctttgct ggcactaagtgtaccagctttcacgatggttcctggaagtgtgacgcatgcccagtgggc tacaccggagatggcatcaactgcaaggacatcgacgagtgcaaggaggtacctgacgcg tgcttcacactcaacggagtccaccgctgtgagaacactgagcctggttacaactgcctt gcctgcccccctcgctactcaggacaacagcccttcgggagaggagtggagcaggccaca gccaagaaacaggtgtgcacaccccgtaacccatgccaagacggcagccatgattgcaac aagaatgccaactgtatctacctgggtcagttcagcgacaccatgttccgttgtgagtgc aaacctggttacgctggcaatggccacatctgtggagatgacactgacctggatggatgg cccaacaaagacctactgtgtgtggagaacgccacctaccactgcaagaaggacaactgt ccaaaccttcccaactctggacaggaggaccacgacaaagatgggcttggtgacgcttgt gatcacgatgatgacaacgatgggatccctgatgatagggacaactgcccaatggtctac aaccccgctcagtatgatgtggacagagatgacgttggtgatcgatgtgataactgtgtg catgagagcaaccctgaccaagtcgacacagacaacaacggagagggggatgcctgtgct attgacattgacggtgatggcattctaaatgagagggacaactgcccttacgtctacaat gtggaccagagagacactgacggggatggagtgggagaccattgcgacaactgccctctt gagcacaacccagaccagattgactctgactcagaccgtgtgggagacaagtgcgacaac aaccaggacattgatgaggacggtcatcaaaacaacttggacaactgtccctatatcccc aacgccaaccaggccgaccacgacaaagacggcaagggtgacgcctgtgaccacgatgat gacaatgatggtatccctgacgacaaggacaactgtaggctggcctttaaccctgaccag ctggactctgatggtgatggtcgtggagatatttgcaaagatgactttgaccaagacaac atacttgatatctacgatgtgtgccctgagaactttgccatcagcgagacggacttccgc aggttccagatggtaccactggaccccaagggcacctcccagatcgaccccaactgggtg gtccgccaccagggcaaagagctagtgcagactgtcaattgtgaccctggcatcgctgtt gggttcgatgagttcaacgcagtggacttcagtggaacgttctttatcaacacagacagg gacgatgactatgctggatttgtatttggctaccagtccagctctaggttctacgtggtg atgtggaagcagatcacacagacctactggtcccacactccgaccagagctcagggttac tccggagtgtccatcaaagtggtcaactccaccacaggacctggggagcatctgaggaat gccctctggcacaccggtgacactgctggacagttgcgtactctgtggcacgaccccaag aacatcggctggaaagactacaccgcgtacagatggcacctgatccacaggcccaagtct ggactcatcagagttgtgatgtatgaaggcaagagaatcatggctgattccggaaatatc tacgacaagacttatgctggtggaagacttggcatgtatgtcttctctcaggagatgaca tacttctcagacctcaagtacgaatgcagagattcttaa

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