Coregonus clupeaformis (lake whitefish): 121539418
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Entry
121539418 CDS
T08357
Name
(RefSeq) guanine nucleotide exchange C9orf72-like
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121539418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121539418
Membrane trafficking [BR:
cclu04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
121539418
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
121539418
NCBI-ProteinID:
XP_041703846
LinkDB
All DBs
Position
25:complement(22980483..22985461)
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AA seq
459 aa
AA seq
DB search
MSSGPPQSPTVAKTEVTVEGECPILAVTFAYWDNILGPQVCHIWAPRCEQPLLLSDGEVT
FLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIISLIFDGELKGDKNTCALSIILPQTE
LAFYLPLHTVCVERLKHIIRKGRIWMQKGYNIISMLTSEIVPIMELLSSMKTHSVPEDID
IKDTILNDDDIGDSCHEDFLHKAISSHLQTCGCSMVVGSNPDKVNKIVRTLCLFLTPAER
KCSRICKADSTFKYDTGLFVQGLLKDSMSSFVFYQVLYSPYPTTHIDVDINTVKQMPPCH
EHTYMQRRYMHSELSALWKAASEEDIAPNTGIHTDQFFTPDQNIFQDVMHKDTLVKSFID
EVFMLKPGLNLRSTYLAQFLLILHRKALTLLKYIEDETQKGKKPFRSLRSLKTDLDLMVE
GDLNIVMALAEKQRAGLHSFVFGKQFYTSVQERDVLMSF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaggcccacctcagtcgcccacagtggctaagacagaggtgactgttgaagga
gaatgccctatcctcgctgtcacctttgcctactgggacaacatcctgggcccgcaggtg
tgccacatctgggctcccaggtgcgagcaaccgctgttgctgagcgatggcgaggtcacc
ttcctggccaatcacacgctgaacggggagattctgcgcagcgcagagtgtggcgcggtg
gacgtcaagttcttcgtcctagccgagaagggtgtcatcatcatttcgctcatcttcgat
ggcgagctgaagggtgacaagaacacgtgtgccctgtccatcatcctgcctcagacagag
ctggccttctatctgcccttgcacacggtctgtgtggagaggctcaaacacataatccgg
aagggacgcatctggatgcagaagggctacaacatcatttctatgctgacatcagagatt
gtccccatcatggagctgctgtcttccatgaagacacacagtgtcccagaggacatagac
atcaaggacaccatcctaaatgacgatgacatcggagacagctgccatgaagatttcctg
cacaaggcaatcagttctcatctccaaacctgtggctgctccatggtggtcggaagcaac
ccagacaaagtcaacaagatagtgcgcacgctgtgcctcttcctcacccctgctgagagg
aagtgctctcggatctgtaaggctgactctactttcaagtacgacacaggactttttgta
caaggcctcctcaaggactccatgagcagctttgtcttctaccaggtgctgtactcgccc
tacccgaccacgcacatcgacgtggacatcaacacggtgaagcagatgccgccctgccac
gagcacacgtacatgcagcgtcgctacatgcactcagagctcagtgcgctttggaaggcg
gccagcgaagaggacatcgcccccaacaccggcatccacactgaccagttcttcacccct
gaccaaaatatatttcaggacgttatgcataaagacaccctggtaaagtcatttatagat
gaggtgttcatgctgaagccaggtctcaatctgcgaagtacttacttggcccagttcttg
ctgatccttcacaggaaggcgctcacactactcaaatacatcgaagatgagacgcaaaag
ggaaagaagcctttccgctccttgcgcagcttgaagacagacctcgacctgatggtggaa
ggcgacctgaatatcgtcatggcattggctgagaagcagagggctggactgcactccttt
gtatttgggaagcaattctacaccagtgtacaggagcgagatgtgctcatgagcttttga
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