Coregonus clupeaformis (lake whitefish): 121540500
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Entry
121540500 CDS
T08357
Name
(RefSeq) receptor-type tyrosine-protein phosphatase F isoform X1
KO
K05695
receptor-type tyrosine-protein phosphatase F [EC:
3.1.3.48
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecule (CAM) interaction
cclu04517
IgSF CAM signaling
cclu04520
Adherens junction
cclu04910
Insulin signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
121540500
04517 IgSF CAM signaling
121540500
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
121540500
09150 Organismal Systems
09152 Endocrine system
04910 Insulin signaling pathway
121540500
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121540500
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121540500
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.48 protein-tyrosine-phosphatase
121540500
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein tyrosine phosphatases (PTPs)
Class I PTPs (Classical)
Receptor PTPs
121540500
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
Type II RPTP family
121540500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Y_phosphatase
fn3
I-set
Ig_3
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_VIN3
Fn3_ROS1
Ig_2
fn3_2
ig
Fn3_PBP1
Interfer-bind
Ig_VEGFR-1-like_5th
Tc-R-P
PTP-SAK
DSPc
V-set
Y_phosphatase3
PTP-NADK
PTPlike_phytase
Fn3_PTPRU
Fn3_ELFN
YxzE
Insulin_TMD
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
121540500
NCBI-ProteinID:
XP_041705353
LinkDB
All DBs
Position
26:complement(1662439..2085077)
Genome browser
AA seq
1926 aa
AA seq
DB search
MEPHHRQAEYPLARGGVLILLLGCLGLPSPSHADSMPSFIKSPDDQTGISGGVASFVCQA
VGDPKPRITWMKKGKKVSSQRFEVIEFDDGSGSVLRIQPLRTHRDEAIYECTAINSVGEI
NTSAKLTVLEEDQIPHGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEISWFKDFLPVD
INSSNGRIKQLRSGGTPIRGALQIENSEESDQGKYECVAVNSAGTRYSAPANLYVRVRRV
PPRFSIPPNNHEVMPGGSVNLTCVAVGAPMPYVKWMMGIVELTKEEEMPIGRNVLEVTNI
RQSANYTCVAISSLGMIETTAQITVKALPKPPTSLIVTETTATSVTLTWDSGNPEPVSYY
VIQYRAKVSDNGFQEVDGVATTRYSIGGLSPYSEYEFLVMAVNNIGRGPPSSLVDTRTSE
QAPSSPPLAVQARMLSASTMLVQWEPPEEPNGQIRGYRVYYSSDLGAPLSAWHKHNTDDS
RLTTISGLTTDITYSLRVLGFTSVGDGPPSDVLQVKTQQGVPAQPSSFEAEAELDTRIML
SWLWPVQDQITKYELMYWEANSGNKLHVTFPPAGSYAVEGLKPDTLYMFSLAARSEMGLG
VYTQPIDARTAQSTPSAPPQEVLLLSLSSTSIKVSWVAPPAASRHGDIVRYTLAYKAATG
EDLQRHEVSVIGADVSSYILKGLEKWTEYQVWVRAHTDIGPGPESPAARIRTKEDVPGAP
PRKVEADALNSTALRVTWKPPLQVKQHGQIRGYQVVYSRLENGEPRGQPNIKDVSLPEAQ
WNVEDSTDDETVITGLLPETTYSVTVAAYSTKGDGARSKAKVVTTTGAVPGKPTMMISTT
IGNTALIQWQPPKEMVGEHMGYQLQYKRMAEESFTVKDFKKTEDHFTVTGLHKGATYVFK
LCAKNRVGNGEEYAKEITTPDDMPSSYPQNLSVVGLTTTTTKLAWEPPALAERNGKIVQY
VVVYRDINSQQNHTNSTTETQMTIMGLQPDTTYDIRIRAFTSKGGGPISPSIQSRTMSTS
MPEFTKNFGVKAVMKTSVLLTWEVPETYKSQVPFKILYNQQSVEVQGNLKRKLITRLQPD
TDYSFVLMSRGNSAGGLQQQVSIRTAPDLLKTKPIQYQHDPEEGGKLTITLPKVPTTAPV
RYYYIVVVPVTPATLRRWENPEDMDLDELLEASSDQSLRRRQTQEFLRPYIAAKMDALPD
TFPLGDEKKYNGFYNKPLPGQQQYLCFVLAALKDHESKTFAASPYSDPITVKLHSGMSLH
AEDPEMLWVMGPVLAVVLIIIIVIAILFFKSKQERKRASPSAKDEHSAGVKDSLLAHSSD
PVEMRRLNYQTQGSSALSCPNTPRMREHPPISTTDLASHLERLKANDGLRFSQEYESVDP
GQQFTWEHSNLEVNKPKNRYANVIAYDHSRVILTSVDGVPGSDYINANYIDGYRKQNDYI
ATQGPLPETLSDFWRMVWEQRTNTIVMMTRLEEKSRVKCDQYWPSRGTETYGMIQVTMLD
TVELATYSVRTFTLYKNGSSEKREVRQFQFMAWPDHGVPEYPTPTLAFLRRVKACNPTDA
GPMVVHCSAGVGRTGCFIVIEAMLERMKHEKSVDIYGHVTCMRAQRNYMVQTEDQYVFIH
EALLEAATCGNTEVPARNLYAHIQKLTQVTPGDTVTAMELEFKKLSNSKAHTSRFISASL
PCNKLKNRLVNIMPFESTRVCLQPIRGVEGSDYINASFIDGYRLQKAYIATQGPLAETTE
DFWRMLWEHNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMPQYILRE
FKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPISVHCSA
GVGRTGVFITLSIVLERMRYEGVVDLFHTAKTLRTQRPAMVQTEEQYQLCYRAALEYLGS
FDHYAT
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcaccaccggcaggcagaatatcccctcgccagggggggcgtgcttatcctg
ctcctgggctgtctgggcctgccatcaccatcccatgcagacagcatgcccagtttcatc
aagtctccagacgaccagacaggtatttcgggaggcgtggcgtccttcgtatgccaggcg
gtgggtgatcccaagccacgcatcacctggatgaagaagggcaagaaagtcagctctcag
cgctttgaggtgatagagtttgatgatggctcagggtccgtcctgcgtatccagcccctg
aggacccacagggacgaggccatctatgagtgtaccgccatcaacagtgtgggagagatc
aacaccagcgccaaactcaccgtcctggaagaggaccagattccccatgggttccccacc
atagacatgggtccccagctgaaggtagtagagcggacccgtactgccactatgctgtgt
gctgccagtggcaaccccgacccagagatctcctggttcaaggacttcctccctgtagat
atcaacagcagcaacggaagaatcaaacagctccgctcaggtggtacaccaatcagagga
gctctccagatagagaacagcgaggagtcggaccagggcaagtacgagtgtgtggcggtc
aacagcgccggaacccgctactcggctccggccaacctctatgtgagagtgcggcgtgtg
ccaccccggttctccatccctcccaacaaccatgaggtgatgccgggtggcagcgtgaac
ctgacgtgcgtggcggtgggagcgccgatgccctacgtcaagtggatgatggggatagta
gagctgaccaaggaagaagagatgcccattgggaggaatgttttggaggtcaccaacatt
cgccagtctgccaactacacctgcgtggcgatatcgtcgctcggtatgatcgagaccact
gcacagatcactgtcaaagccctgcccaagccccccacctccctgatcgtgactgagacc
acagccaccagcgtcactctgacctgggactctgggaaccctgagcctgtgtcctactac
gtcatccagtaccgggccaaggtctctgacaacggcttccaggaggtcgacggagtagcc
accacgcgctacagcatcggcgggctcagcccctactctgagtatgagttcctagtcatg
gcggtgaacaacattgggcgtggccctcccagcagcctcgtggacaccaggaccagtgag
caggctccctcctctccaccgctggctgtacaggctcgcatgctcagcgcatccaccatg
ctggtccaatgggagccgcccgaggagcctaatggacagatcagagggtaccgggtgtac
tatagctcggacctcggagccccgctgagtgcgtggcacaaacacaacactgatgacagc
agactgaccaccatctcagggttgaccacagatatcacctacagcctcagggtgctgggg
ttcacctctgtaggggatggacctccatctgatgtactgcaggtcaagacccagcaggga
gtaccagcccagccatctagcttcgaggcggaggcagagttggacacccgcatcatgctg
tcgtggctgtggcctgtccaggatcagatcaccaagtacgagctcatgtactgggaggct
aactcgggcaacaagctccatgtgaccttccctccagcggggtcctatgctgtggagggt
ctgaagccagacaccctttacatgttctccctggctgctcgctctgagatgggtcttggc
gtctacacccaacctattgatgccaggactgcccagtccaccccctcagccccaccccag
gaggtactcctgttgagcctcagctccaccagcatcaaggtgagttgggtagcgccccct
gcagccagccgccatggggacatcgtccgctacacactggcctacaaggccgccaccgga
gaggacctgcagcgccacgaggtgtcggtcatcggggcagacgtctctagttacatactg
aagggcctggagaagtggacagagtaccaggtgtgggtcagggctcacacggacataggc
ccaggcccagagagccccgcagcccggatcaggaccaaggaggatgtgcccggagcccct
cccaggaaggtggaggctgatgccctgaactccacagccctgagggtgacgtggaagcct
cctctccaggtgaaacagcacgggcagatcagggggtaccaggtggtctactcacgactg
gagaatggagagccacgaggccagcccaacatcaaggacgtctccctacctgaggcacag
tggaacgttgaggattcgacggacgatgagactgtcataacaggcctgctccctgagacc
acctactctgtcaccgtggcagcctacagcaccaagggggacggggcacgcagcaaggcc
aaggtggtcactaccacaggagcagtcccaggcaagcccactatgatgatcagcaccacc
atcggtaacacagccctcatccagtggcaacctccgaaggagatggtgggagagcacatg
ggctaccagctgcagtacaaacgcatggcggaggagtcgttcaccgtaaaagacttcaag
aagacagaagaccacttcaccgtcaccggcctgcacaagggcgccacctacgtcttcaag
ctctgcgccaaaaaccgggtgggcaacggggaggagtatgcgaaggagatcaccacgccg
gacgatatgcccagtagctacccccagaacttgagcgttgtgggcctgaccaccaccacc
accaagctggcctgggagcctccggcgctggctgagaggaacgggaagattgtccagtat
gttgtggtgtacagagatatcaacagccagcagaaccacaccaacagcacgacagagacc
cagatgaccatcatggggctgcagcctgataccacctatgatatcaggatcagggcattc
accagcaagggaggaggacccatcagtcctagtatacagagcaggaccatgtctacctcc
atgccagagttcaccaaaaactttggtgtgaaagccgtgatgaagacatcggtcctgctg
acttgggaagtgccagaaacatacaagtctcaagtgcctttcaaaatcctgtacaaccag
cagagtgtggaggtgcaggggaacctgaagaggaagctgatcacgaggctgcagccagac
acagactacagctttgtgttgatgtctagagggaacagtgctgggggtctacagcagcag
gtctccatcaggaccgccccggacctgctcaagaccaaacccatccaataccaacacgac
ccagaggaggggggcaagctcaccatcaccctgcccaaagtccccaccaccgcccctgtc
agatattactacatagtggtggttcctgtcacaccagccacactacgcaggtgggagaac
cctgaagatatggacttggatgagctcctggaggctagttctgaccagagcctgaggagg
agacagacccaagagttcctcagaccctacattgctgccaagatggatgctctgccagac
accttccctctaggagacgagaagaagtacaatggcttctacaacaagcctctaccgggc
cagcagcagtacctctgtttcgtactggctgccctcaaagaccacgagtctaagacgttt
gcggccagcccgtactcggaccccatcacagtgaagctccacagcggtatgtccctccat
gctgaggacccagagatgctgtgggtcatgggccctgtcctagccgtcgtactcatcatc
atcattgtcatcgccatcctgttcttcaagagcaaacaagaaaggaaacgagcatctccc
tctgccaaggatgagcactctgctggggtgaaggactctctgctggcccactcctctgac
cctgtggagatgagacgacttaactaccagacacaaggttccagtgccctcagttgtccg
aacactccaaggatgagggagcaccctcccatctccactactgatctggctagccacttg
gagcgacttaaggccaacgacggactccgcttctcacaggagtatgagtctgtagaccct
ggccagcagttcacgtgggaacattctaacctggaagtaaacaagccaaagaaccgctat
gcaaatgtcatcgcctacgaccactccagggttatcctcacctccgtcgacggagtgcca
ggtagcgactacatcaatgctaactacatagacggctacaggaagcagaacgactacatc
gctacacagggcccgcttcctgaaaccttgagtgacttctggaggatggtatgggagcag
aggaccaacactatcgtcatgatgaccagactggaggagaagtcacgggtgaagtgtgac
cagtactggcccagtcggggtacagagacttatgggatgatccaggtgaccatgttggac
actgtggagctggctacctatagcgtacgcaccttcaccctctataagaatggctccagt
gagaagagagaggttcgtcagttccagttcatggcctggccggaccatggagtgcctgag
taccctacccccaccctggccttcctacgcagggtcaaggcctgcaacccgacagacgca
gggcccatggtggtccactgcagtgctggtgtagggcggaccggttgcttcatcgtgatc
gaggccatgctggagcgtatgaagcatgagaagtctgtggatatctacggtcatgtgacg
tgtatgagagctcagcggaactacatggtgcagacggaggaccagtatgtcttcatccac
gaggccctgctagaggctgccacctgcggtaacacagaggtccctgcacgcaacctgtac
gcacacatccagaaactcacccaggtcacacccggagacaccgttaccgccatggagcta
gagttcaagaaactgtccaactctaaagcacatacctcaagattcatcagtgccagcctc
ccctgcaacaagttgaagaaccggctggtgaatatcatgccttttgagtccacccgcgtg
tgtctgcagcctatcagaggtgtggaaggctccgactacattaacgccagcttcatcgac
ggatacaggctgcagaaggcctacatagccacccagggcccactagcagagaccacagag
gacttctggaggatgctgtgggaacacaactctaccatcgtagtcatgctcaccaaactc
agagagatgggacgggaaaagtgccatcagtactggcctgctgagcgctctgccaggtac
cagtactttgtagtggaccccatggctgagtacaacatgccccagtacatcctccgagag
ttcaaggtcacagacgccagggatggccagtctaggaccattcggcagttccagttcact
gattggccagaacaaggggtgccaaaaactggagagggctttattgacttcattggccaa
gtgcataaaaccaaggaacagtttggacaggatggaccaatctctgtgcactgcagtgct
ggtgttgggcggactggtgtgttcatcaccctgagtatcgtgctggagaggatgaggtac
gagggggtggtggacctcttccataccgccaagacactgaggacccagagacctgccatg
gtgcagacagaggaacagtaccagttgtgctacagggcagctctggagtaccttggcagc
tttgaccactatgcaacataa
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integrated database retrieval system
