Coregonus clupeaformis (lake whitefish): 121541579
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Entry
121541579 CDS
T08357
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04137
Mitophagy - animal
cclu04141
Protein processing in endoplasmic reticulum
cclu04210
Apoptosis
cclu04217
Necroptosis
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04920
Adipocytokine signaling pathway
cclu05132
Salmonella infection
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121541579
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121541579
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
121541579
09143 Cell growth and death
04210 Apoptosis
121541579
04217 Necroptosis
121541579
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
121541579
04622 RIG-I-like receptor signaling pathway
121541579
09152 Endocrine system
04920 Adipocytokine signaling pathway
121541579
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121541579
09171 Infectious disease: bacterial
05132 Salmonella infection
121541579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121541579
04121 Ubiquitin system [BR:
cclu04121
]
121541579
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121541579
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
121541579
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
121541579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
Sina_ZnF
MATH
DUF4795
Rootletin
Motif
Other DBs
NCBI-GeneID:
121541579
NCBI-ProteinID:
XP_041706620
LinkDB
All DBs
Position
27:17299469..17318010
Genome browser
AA seq
596 aa
AA seq
DB search
MATQEPSPPSSMESNKPGFPKKILANKLEDKHLCNCCHNLLRRPFQAQCGHRFCSYCFNM
TVRDGPQKCNACIKEDIFEELTSILKQGCAFPDNAARREVENLSAVCINEGCTWKGNIKE
YELSHEEKCEYMIIPCPSCKERICFNEQERHNERECPERTLNCKYCKEPFHFKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKERIHDHERACA
YEHLNLLLHYIMGMKVSMEGLQPHGLEQAGHKLLDLHHSLRELEARVSQLSTTSIGPTVQ
GATSSSSSSLGLPGPPAPALPLPPPPTPATTLTVSTSFTPLPSSVGAALELQLHSEKTKV
AELGRRCTDLEVKVGTFENVVCVLNREVERFTTTMEAGNRQHRLDQDKIDALSNKVRQLE
RTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFTKKRQDAIAGRAPAMFSPAFYTSK
YGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLDQSSREHIID
AFRPDITSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDIIFIKATVDLTGL
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggccacgcaagaaccatcccctccatcgtccatggagagcaacaaacccggcttcccc
aagaagatcctggccaataagctggaggataagcacctgtgtaactgctgtcacaacctg
ctgcggaggcccttccaagcccagtgtggacaccgcttctgttcctactgcttcaatatg
actgtcagagatggacctcagaaatgcaatgcttgtatcaaagaggacatttttgaagag
ctgacgtcgattctaaaacaaggctgtgcttttcctgacaacgcagctcgaagagaggtc
gaaaacctctctgctgtctgcatcaacgaaggctgcacttggaaaggcaatattaaagaa
tacgagttgagccacgaggagaagtgtgagtacatgatcatcccctgcccctcctgtaaa
gagcggatctgcttcaacgaacaggaacgccacaacgagcgagagtgccccgagagaacc
ctcaactgcaagtactgcaaggaaccattccatttcaaaaacatcaaggcccacgacgag
atctgcccaaagtaccccatgatctgtgaaggctgtgccaagaagaaaatccccagggag
aagtatgtggaccacattaagttctgcagcaaattcagaacgccatgcagattccatgtt
gttgggtgtgatatgtcagtggagaaggagaggatccacgaccacgagagggcctgcgca
tacgaacacctcaacctgctgctacactacattatgggtatgaaggtgagcatggagggc
ctgcagccacatggactggagcaagccggacacaagctcctggacctccaccattccctt
agggagctggaagcccgcgtctcccagctcagcaccacttctatcgggcctaccgtgcag
ggggccacctcctcctcttcctcctccttaggcctccccgggcctcctgccccggctctt
cccctgcctccacctcccaccccggcaacaacactgaccgtgtccacctccttcaccccc
ctgcccagctcggtgggggcggccctggagctgcagctccacagtgagaagaccaaggtg
gcggagctgggacgcaggtgcaccgacctggaggtgaaggtggggacgtttgagaatgtg
gtgtgtgtgttgaaccgagaggtagaacgcttcaccaccaccatggaagcaggtaacaga
cagcatcgcctggaccaggataagattgatgccctgagcaacaaggtgcggcagctggag
aggacggttgggctgaaggacctgacggtagcggagatggagggcaggcttagggagatg
tcggccaccacattcgacggcgtcttcgtctggaggatctctgacttcaccaaaaagaga
caggacgccatcgctggccgagcccctgccatgttctcaccagcattctacaccagtaaa
tacggctataagatgtgtctgcggatctacctgaatggggacgggacagggcgtggcagc
cacctgtctctgttctttgtggtgatgaggggattgagtgatgctctgctgaaatggccc
ttcaaccagaaggtgactctgatgctgctggaccagagtagcagggagcacatcatcgac
gccttccggcctgacatcacttcctcctccttccagaggcctgtgagcgagatgaacatc
gccagcggctgcccgctgttctgcccgctctcaaagcttgacgccaagaactcctacatc
cgcgatgacatcatcttcatcaaggccaccgtggatctcacaggcctctag
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