Coregonus clupeaformis (lake whitefish): 121541654 Help Entry 121541654         CDS       T08357                                  Name (RefSeq) TNF receptor-associated factor 2   KO K03173   TNF receptor-associated factor 2 [EC:2.3.2.27] Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04010   MAPK signaling pathway cclu04137   Mitophagy - animal cclu04141   Protein processing in endoplasmic reticulum cclu04210   Apoptosis cclu04217   Necroptosis cclu04621   NOD-like receptor signaling pathway cclu04622   RIG-I-like receptor signaling pathway cclu04920   Adipocytokine signaling pathway cclu05132   Salmonella infection cclu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04141 Protein processing in endoplasmic reticulum     121541654  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     121541654  09140 Cellular Processes   09141 Transport and catabolism    04137 Mitophagy - animal     121541654   09143 Cell growth and death    04210 Apoptosis     121541654    04217 Necroptosis     121541654  09150 Organismal Systems   09151 Immune system    04621 NOD-like receptor signaling pathway     121541654    04622 RIG-I-like receptor signaling pathway     121541654   09152 Endocrine system    04920 Adipocytokine signaling pathway     121541654  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     121541654   09171 Infectious disease: bacterial    05132 Salmonella infection     121541654  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cclu03019]     121541654    04121 Ubiquitin system [BR:cclu04121]     121541654 Enzymes [BR:cclu01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      121541654 Messenger RNA biogenesis [BR:cclu03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Stress granule specific factors      121541654 Ubiquitin system [BR:cclu04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     121541654 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_4 zf-RING_5 zf-RING_4 zf-C3HC4_2 zf-RING_6 TRAFD1-XIAF1_ZnF Motif Other DBs NCBI-GeneID:  121541654 NCBI-ProteinID:  XP_041706762 LinkDB All DBs Position 27:complement(23968673..23992716) Genome browser AA seq 526 aa AA seqDB search MARISLPSLDSSLPGIPQSVLAVSMETKYQCQQCHQVLRKPVQAQCGHRFCVHCFKLLTS SGPKPCEACRQEEIYEEPQSILNSNEAFPDNAAGREIASLPAKCISEGCSWTGCIKEYEA QHEGKCEYERLPCEACQALILRSEKEKHNERECEARTLNCKYCKVSFNFKEIKAHDEICQ KFPMQCKDCGKKKIPREKFLDHSRSCAKSKTACPFSEVGCKAVIDNGKHSDHEQTSVMEH MRLILALMSMVRLQRPEAPGSGEWQEDSGLGLYRAPEDGATATAATAGGGAAASGQMCGL DHKVTALENIVCVLNREVERSSLTLEAFSRQHRLDQDKIENLSNKVRQLERTLTMRDLQL AETDQTLRELQFCTFDGVFVWKIADFSRRRQDAVAGRTPAMFSPAFYSSKYGYKMCLRLY LNGDGTGRGTHLSLFFVVMRGKCDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDVSSTS FQRPISEMNIASGCPLFCPLAKLAGKSSYLRDDTIFIKAIVDLTGL NT seq 1581 nt NT seq  +upstreamnt  +downstreamnt atggcccgcatatccctaccttctttggactcctcccttccagggataccccagagtgtg ctggctgtttccatggaaactaagtaccaatgccagcagtgtcaccaggtcctgagaaag ccggtccaggctcagtgtggacatcgtttctgtgtccattgtttcaaactgctcaccagc tccggcccaaagccctgtgaagcctgtcgacaggaggagatatatgaggagccacagtcc attctcaatagtaatgaggcttttccagacaatgcagctggtagagaaatcgccagcctg cctgccaaatgtatcagtgagggatgctcttggactggttgcataaaagaatatgaggca caacacgagggcaagtgtgagtatgagcggttaccatgtgaagcctgccaggccctcatc ctgcgcagtgaaaaagagaagcacaacgagagagaatgtgaagcaaggacattgaactgc aagtactgcaaagtctccttcaacttcaaggaaatcaaggctcatgatgaaatctgccag aagtttcccatgcagtgcaaggactgtggaaagaaaaagatcccacgggaaaagtttcta gatcacagcagatcctgtgccaagtctaagactgcatgtccattcagtgaggtcggctgc aaggctgttattgataatgggaaacacagtgaccacgagcagactagtgtcatggagcac atgcgtctgatcctggcgctgatgtctatggtgcgtcttcagcgtccagaggccccaggg tcgggggagtggcaggaggactctgggctgggcctgtaccgcgctcctgaggatggagcc acagctactgcagccacagctgggggaggagctgctgcctctggacagatgtgtggcctt gatcacaaggtgacagcactggagaatatagtgtgtgtactgaacagagaagtggagagg agttctctcactttagaggccttctcacggcaacatcgtctagaccaagacaagattgag aacctcagcaacaaggtacgtcaactagagcgtactcttaccatgcgggacctacaactg gctgagacagaccagactctgagagaactccagttttgcacgtttgatggtgtctttgtc tggaagatcgctgacttctcacgccgccgccaggacgctgtggccggacgaacacctgct atgttctcaccagcattctactcgagtaaatatggctataagatgtgtctgagactttat ctgaatggggacggaacgggtcgagggacacacctttctcttttcttcgtggtgatgagg ggcaagtgtgacgctcttctcaaatggcccttcagtcagaaggtgacactgatgctgctg gatcagaataacagggagcatatcattgatgcgttccggcccgatgtaagctccacctct ttccagcgaccaatcagtgagatgaacatagccagtggctgcccactcttctgcccattg gctaaactggcaggcaagagttcctaccttagggatgacacaattttcatcaaggccatt gtagacctcacaggcctgtag

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