KEGG   Coregonus clupeaformis (lake whitefish): 121542394
Entry
121542394         CDS       T08357                                 
Name
(RefSeq) lysine-specific demethylase 2A
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121542394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121542394
   04121 Ubiquitin system [BR:cclu04121]
    121542394
   03036 Chromosome and associated proteins [BR:cclu03036]
    121542394
Enzymes [BR:cclu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     121542394
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    121542394
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     121542394
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    121542394
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     121542394
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like JmjC F-box Cupin_8 SR-25 DUF5386
Other DBs
NCBI-GeneID: 121542394
NCBI-ProteinID: XP_045063602
LinkDB
Position
3:23306161..23319011
AA seq 1324 aa
MEDQNPRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQSDRFNSYLIKHMDGKDF
TFEYIQREGLRDPIVFEKKDGLGLEMPDSDFSVSDVKLFVGSRRMVDVMDVTTQKGIEMS
MAQWRRYYETPPSERDKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNSIIEMQYPKVQKYCLMSVQGCFTDFHVDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKAQDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPEFQKHSLGVG
LTREDSENKLNGHVKNGTEKKKEGDDGEEEKEESETKVKMEESDDDSFPPPGATKLGVRV
NLTPLELEGLWNLLGKLEELPAHKKCVPAGIRNAPALLHDIRALLEEHCNDDPKLSYTGK
PIVKWPKRPSWYQPPPPSVVYRPHLAMPHKAVVSRPAKPASISALRRRRVRCKHCAACQR
KECGECNFCKDMRRFGGPGRMKKGCMMRQCLTPCLPNSAVCALCGGGQGKQECSDASPSS
TTLMECSSCAQIAHPDCIKVPGEGRINKDLPSCWECPKCYQGEEGSSSESSSSDEDSMVS
TGSLSTSRPSTHAHREGIGDGEAGGGVRKGRRGRPRLTSSLSQRRVPPPSQRLLLQQQQN
RKRAGALELRLRKRIKLERSKILQSKQTFSLERSPKLLSSQGLTHLHRGVSSHLHSPVGR
LSRGRGSFRGSPYHSPTGACLQPPQPSLSLAPAGRGEGHRERGRGVRLRGGAAGRGRRGQ
RHGGAEEESDSSSSSSSSSSSSSDEERENGLRARRNKENQPQRRGRGAAKEDEEEQSEES
NQNGEEMDEDGREGGQAQTEPPVLVVSDLSDDLMKGSYLTVTLQPSRAKRDPGAIVPKLE
AAVAPRPAPPGQSYIQRKNLARPPLRTHAPDPYAAPSRSDRHTHTRGSHPDQRRTRPGRP
ERTNNGASSSSPVPPLLLPLSALQDGEREVANGGSEPGCEREVWVSVFRYLTRAELCVCM
AVCKNWHKWSLDKRLWMQVDLSVSKSISPQALSGIIKRQPVTLDLSWTSISKKQLTWLIN
RLPGLKDLMLSGCSWSSISALSSPSCPLLRTLDLRWADGIKDGQVRDLLNPPGCDNRSQL
RNMQSFRLAGLEISDSTLRLVIRHMPLLTRLDLSHCGGLTDQSINLLTAVGSSTRNTLTE
LNLGGCSKLTDACLRYLRRLSCLSLLDLRECKSVSRKACEAFISELSVNTVYCLSEDKLI
QRIS
NT seq 3975 nt   +upstreamnt  +downstreamnt
atggaagaccaaaaccctcgttacagcaagcgcttgcgtacggggacgcggcggcgctac
caggatgacggtatctcggacgatgagattgaggggaagaggacgtttgacctggatgag
aagctgcagagtgacaggttcaactcctacctgattaaacacatggatggaaaagacttc
acattcgagtacatccagagggaggggctgagagaccctatcgtctttgagaaaaaagac
ggtctcggcttagaaatgccagactctgatttcagtgtgagtgatgtcaagctgttcgta
ggcagtcggaggatggttgacgttatggatgtgaccactcagaagggcatcgagatgtcc
atggcccaatggcggcggtactacgagaccccgccctcggagcgagataagctctataat
gtcatcagcctggagttcagtcacaccaagctggagaacctggtgaaacgacccgcctcg
gtggatttgatagactgggtggacaacatgtggccaaggcacctaaaggaaagacagaga
gactcaaccaactccatcatagaaatgcagtatcccaaagtgcagaagtactgtctgatg
agtgtccagggctgcttcacagacttccacgttgactttggtggtacgtcagtctggtac
cacatcctgcgggggggcaaggtgttctggctgatcccgcccacaccccagaacttggag
ctgtatgagaactgggtgttgtcagggaaacagggagacattttcctgggggacaaggct
caggactgtcagaggatagaactgaagcagggatacaccttcatgatcccctccggctgg
atccatgctgtgtacacccctgaggacacactggtgtttgggggaaacttcctccacagc
ttcaacatccccatgcagctcaacatctacaatattgaggaccgcacacgagtcccggct
aagttccgataccccttctactatgagatgtgctggtacgtgttggaaagatacctctac
tgcctgaccaacacctcccaccttacccctgagttccagaagcactctctcggcgtcggt
ctgacccgtgaagactctgagaacaaactcaacggccacgtgaaaaacggcacggagaaa
aagaaagagggagacgatggtgaggaagaaaaggaggaaagtgagacaaaggtcaagatg
gaagagtctgatgatgattccttcccccctcctggtgccactaagctgggggtgagggta
aacctgacccccctggagctggaggggctgtggaacctgctggggaagctggaggagctg
ccggcccacaaaaagtgtgtccccgcaggcatccgcaacgcccccgccctgctccacgac
atacgggctcttctggaggaacactgcaacgacgaccccaagctgtcttacactggaaag
cccatcgtcaagtggcccaagaggccctcgtggtaccagccccctcccccctcagtggtg
taccgtcctcatctcgccatgccccacaaggccgtggtctcgcgccctgccaagcccgcc
tctatctcagctctgagaaggcggcgcgtgcgctgcaaacactgtgcagcctgccagagg
aaggagtgtggcgaatgcaacttctgcaaagacatgaggaggttcggaggaccagggcgc
atgaagaagggctgcatgatgcgccagtgtctcactccttgcctgcctaactcagcggtg
tgtgctctgtgtggagggggccaggggaagcaggagtgttcagacgcaagcccctcctcc
acaaccctcatggaatgctccagctgtgctcagatcgcccaccccgactgcatcaaggtt
cctggggagggcaggatcaacaaggacctgcccagctgctgggagtgtcccaaatgttac
cagggcgaagaaggctcctcatcagagtcgtccagcagtgatgaggacagtatggtgtct
acaggttctctctctacgtcgaggccgtcgacgcatgcccaccgggaggggataggagat
ggggaggcaggcggtggggtgaggaaggggcgacgcggcagaccccgcctgacgtcctct
ctgtcccagcggagagtgccgcctccctctcagcggttgttactgcagcaacaacagaac
aggaagagagccggagcactggagctacgactcaggaagaggattaaactggagcgcagc
aaaatcttacaatcgaagcagacgttttctctggagcgttctcctaagctcctgagctcc
cagggtctaacccacctccacagaggggtgtcctctcacctccactcccctgttggcaga
ctgtcccggggccgtgggtccttcagaggctccccctatcactcccctacaggggcgtgc
ctccagccccctcaaccctccctcagcctggcccccgcaggcaggggagaggggcacagg
gagcgagggagaggagtacggctcagaggaggagcagcagggagaggaagaagaggacag
agacacggaggagcagaggaagagagtgatagcagtagcagtagtagcagcagtagtagt
agtagtagtgatgaggagagggagaacggcctgcgggccagacggaacaaagagaaccaa
ccacagagacgaggaagaggagcagccaaagaagatgaagaggagcagagtgaggagtcc
aaccaaaacggagaagaaatggatgaagacgggagggaaggaggacaggcgcagacggag
ccaccggtcctcgtagtgtcggaccttagcgacgacctcatgaagggctcgtatctcacg
gtgaccctacagccgtcgagggccaaacgtgacccgggggccatcgtccccaaactggag
gctgcagtcgccccccggcctgcccctcccggccagagttacatccaacgcaagaacctg
gcccgaccacccctcaggacccacgccccagacccctacgctgcaccctcgcggtcagac
agacacacacacacacgcggctcccatccagaccagaggagaacgaggccgggcagacca
gagagaacaaacaacggcgcttcctcctcctcccctgttcctcctctactcctccctctg
tcggctttacaggatggggagagggaggtggcgaatggagggagcgagccaggctgtgag
agggaggtgtgggtatctgtcttccgttacctgactcgcgctgagctctgtgtctgcatg
gccgtctgcaagaactggcacaaatggagcttggataagaggctgtggatgcaggtcgat
ctgagcgtatctaaatccatcagtcctcaggctctgtcaggcatcatcaaacgccagcca
gtcaccttggacctctcctggacctccatctccaagaaacaactcacctggctcatcaac
cgcctgccagggttgaaggatctcatgttgtctggctgttcctggtcttccatttcggct
ctgagctcgcccagctgccccctcctgcgcacgctggacttgcggtgggccgacgggatc
aaagacggacaggtcagggacctactcaaccccccaggttgtgataaccgcagtcagctc
aggaacatgcagtctttccgtctggcggggctggagatcagtgactctactctgaggcta
gtgatcagacacatgcctctgctgacccgtctagacctgtcccactgtggaggcctcact
gaccagtccatcaacctgctcactgccgtgggctcctccacacgcaacacactcactgag
ctcaacctagggggctgcagtaagctgacggacgcgtgtctgcggtacctccgccggctc
tcctgcctctccctgctggacctgcgggaatgcaagagtgtgtcccgcaaagcctgcgag
gccttcatctctgagctgtctgtcaacaccgtctactgcctatctgaagacaaactgatc
cagaggatatcctag

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