KEGG   Coregonus clupeaformis (lake whitefish): 121542669
Entry
121542669         CDS       T08357                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, E-S beta chain isoform X1
  KO
K06752  MHC class II antigen
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121542669
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121542669
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121542669
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121542669
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121542669
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121542669
  Exosomal proteins of epithelial cells
   121542669
  Exosomal proteins of breast milk
   121542669
SSDB
Motif
Pfam: C1-set C2-set_2 Ig_3 C2-set_3 Cna_B MHC_II_beta
Other DBs
NCBI-GeneID: 121542669
NCBI-ProteinID: XP_041708085
LinkDB
Position
28:7201929..7206283
AA seq 266 aa
MSVLNFSSIHLVLLFSLSEVVYSSDGDFTHYNARCEFREVHDIEYIEEFHFNKVMMAWYN
STKDKWTGYTPHGLDLANIFNGDLYDHLARRAAMDILCVANADLLYGYLHNYTFEPYVRL
RSVEPFNTRHSSMLVCSAYDFYPKPIRVTWLKNGQEVTSDVTSTEELANGDWTYQIHSHL
EYTPTPGEKITCMVEHFSLTEPKLYDWDPSIPESERNKMVIGACGLLLGVVFIAAGLIYY
RKKSTGEETQASAHLFSRSLGQTILR
NT seq 801 nt   +upstreamnt  +downstreamnt
atgtctgtgctgaatttctcctccatacacctggtgctcctcttctctctgtctgaagtg
gtgtattcatcagatggagatttcacacactataatgctaggtgtgagttcagagaagta
catgatattgagtatattgaagagtttcatttcaacaaggtgatgatggcatggtacaac
agcaccaaggataaatggacaggatacacaccccatggactggatcttgcgaacattttt
aatggagatctttatgaccatcttgcaagaagagcagcaatggatattttgtgtgtggcc
aatgctgatttactctatggctacctacataattatacatttgagccctacgtcaggctg
aggtcagtggagccgttcaataccagacactctagcatgcttgtgtgcagtgcctacgac
ttctaccccaaacccatcagagtgacgtggctgaagaacggacaggaagtgacctcagat
gtgacctccacagaggagctggccaatggggactggacctaccagatccactcgcacctg
gagtacacgcccacacctggagagaaaatcacctgtatggtggagcacttcagcctcact
gagcccaagctgtatgactgggacccctccatccccgagtctgagaggaataagatggtg
atcggggcctgtgggctgctgctgggggtggtctttatagcagctggactgatctactac
aggaagaaatctactggtgaggagacacaggcctcagcacatctattttctagaagtcta
ggtcaaaccatcctgagatag

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