KEGG   Coregonus clupeaformis (lake whitefish): 121543260
Entry
121543260         CDS       T08357                                 
Name
(RefSeq) H-2 class II histocompatibility antigen, A-Q alpha chain
  KO
K06752  MHC class II antigen
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145  Phagosome
cclu04514  Cell adhesion molecules
cclu04672  Intestinal immune network for IgA production
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    121543260
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    121543260
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    121543260
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121543260
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121543260
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   121543260
  Exosomal proteins of epithelial cells
   121543260
  Exosomal proteins of breast milk
   121543260
SSDB
Motif
Pfam: C1-set MHC_II_alpha Ig_3 Ig_2 C2-set_2 ig C2-set_3
Other DBs
NCBI-GeneID: 121543260
NCBI-ProteinID: XP_041708952
LinkDB
Position
28:complement(520963..524142)
AA seq 245 aa
MNLSVAIVVLTAVVCTSAEIPHEAVYVLGCLEQTKVEAEAEVQVDGEEVLYADFQRGQEV
WTLPEFLGPFPGSTVVHNFYKNAVKGRRLCRDVLALWILDEKCPPEIMDAPESTIYPRDE
EELGVENTLICFANHFYPPPVKVNWAKNGLEVTEVASLSRYYPNEDGTFYQFSTLSFTPQ
EGDVYACTVEHTALKDPKTRFWEYEVSEVSGSSAGPAVFCGVGLTLGLLGVATGTFLYVK
GQQFN
NT seq 738 nt   +upstreamnt  +downstreamnt
atgaacctctctgtggctattgtcgttctcactgcggtcgtctgcacttcggcagaaatt
cctcatgaggccgtctatgtgctgggctgtcttgagcagacaaaggtggaggcagaggcg
gaggttcaggtggatggggaggaagtgttatatgctgacttccagagaggacaggaagtt
tggacgttgcctgagttcctggggccattcccaggctccactgttgttcataacttctac
aagaatgccgtcaaaggcagacgattgtgtcgggatgtcttggctctttggatattagac
gaaaagtgtccacctgagataatggatgcccctgagagcaccatctaccccagggatgag
gaggagctgggggtggagaacacccttatctgttttgccaatcatttctaccccccgcct
gtcaaagtcaactgggccaagaatggcctcgaggtgactgaggtagcatctctcagtcgg
tactatcctaatgaagatggaacgttctaccagttctccaccctgagtttcaccccacag
gagggggacgtctacgcctgcactgtggagcacacggccctgaaggaccccaaaaccagg
ttctgggagtatgaggtcagtgaggtgagtgggtccagtgctggtcctgctgtattctgt
ggagtgggcctgactctgggactgttgggagtggctactggaacattcctctacgtcaaa
ggacaacagttcaactga

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