Coregonus clupeaformis (lake whitefish): 121543412
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Entry
121543412 CDS
T08357
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X1
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121543412
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
121543412
04261 Adrenergic signaling in cardiomyocytes
121543412
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121543412
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121543412
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
dCache_1
VWA_2
DUF2201
MCP-like_PDC_1
TMEM240
Motif
Other DBs
NCBI-GeneID:
121543412
NCBI-ProteinID:
XP_041709191
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Position
28:complement(24922875..25117128)
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AA seq
1092 aa
AA seq
DB search
MDTNCSFTALLLLLASLNSVSTVQFPSPLLIKEWVEQMQQELVTLTDTASGVQNLIQIFQ
SHRKYFSVGSNDASQLVATAAGNIEKLLANRSRALKTLASAAEDFQMRHRWKNDPEPDDI
HYYYAKENLDSNDTEVKKPNRLYPEFKEDEQFRRLISYNTTAVHIPTDIYEGSTIVLNEL
NWTDALEEVFRKNKEEDPTLLWQVFGSATGLARYFPASPWMDSRKTPNKIDLYDVRRRPW
YIQGAASPKDMLILVDASGSVSGLTLKLIHTSVNEMLETLSDDDYVNVVYFNDKAVKAAC
FQNLVQANVRNKRFLKDAVRNISAKGITNYKGGFELAFEQLSSLNVTQGRALCNKIIMLF
TDGGEERAQEIFQKYNADKKVRIFTFSVGQHNYDKGPIQWMACTNKGYYYEIPSIGAIRI
NTQEYLDVLGRPMVKANNKAKQVQWTNVYQDALELGLVITGTLPVFNKTNTKADKERGQQ
RPQNQLILGVMAIDVSLDDIKRLTPRFTFGPNGYYFAIDPNGYVLLHPNLCPKNPKFQEP
VTLDFLDAELEDEIKVEIRTNMINGETGYRTVHTLVKSQDERYIDRSQRSYTYAPVKGTD
YSLALVLPAYSLHYIHTTIGDTITQAKLELGDEVSESLQEDKFEEYGYTLIAPREYCKDL
KPSKNNTEFLMDFNEYIDRKTPNNPLCNVDLVNRLLLDAGITSDLVKQWRDQMPNGVLAR
FVATDGGITRIYPKNAGLDWTEDPETYESSFYKRSLDNDIYIFTPTPYQEDTNMTEDSVL
VSRAVNLDIDGVRLKPAVVGVKLDINTWMTNFINATLKMNCKDEICGCQRNDEHVDCVIL
DDGGFLVMANRDEYISQIGQFFGMIDPILMVNLVNMSLFTLNKTYDYQSVCDPKRESKGS
AAGLRSVYAPTIADILNIGWLASAAAWSILQQLLVSITFPNFLHAADTDDEIPDMSKESC
ITEQTQYFYDNDEKSFRGTLDCENCSRMFHAEKLWKTNLVFVIADAKLTCMSCDPKPLIQ
AEQPSEGPDPCEMAEKPRFRKGPDACFDNNEREEDFDCGGASALSPSLLAMVALQLALLW
LLASSTHHAVPS
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggatactaactgctccttcaccgctctgcttttacttctggcttcgttaaatagtgtg
tcaaccgtgcagttcccgtcgccacttctgataaaggaatgggtggagcagatgcagcag
gagctggtcacactgacggacacagccagcggagtgcagaacctcatacagatcttccag
agccacaggaaatacttcagtgtggggtccaacgatgccagccagctggtggctaccgca
gcgggtaacatcgagaagctcctggccaaccgttctcgtgctctcaagacactggcatcc
gctgcagaggattttcagatgcggcatcggtggaagaacgatcctgagccggatgacatt
cattactactatgccaaagaaaacctggactcaaatgatacagaggtcaagaagccaaac
cggctttatccagagtttaaggaagacgagcaatttagacgactcatctcctacaacacc
acggcagtccacatacccacagacatatacgagggctccaccattgtgctgaatgagctt
aactggacagacgcattagaggaagtgtttaggaagaacaaggaagaggatcctactctc
ctgtggcaggtgttcggcagcgccaccggattggctcgctacttcccagcatccccttgg
atggactcgcgaaaaacgcccaataagattgacctctacgacgtccggcggcgaccgtgg
tacatccagggggcggcgtcacctaaggacatgctgatcctagtggatgcgagtggcagt
gtctctggcctcaccctcaagctaatccacacctctgtcaacgagatgctggagaccctg
tcggacgatgactacgtcaatgtggtctatttcaatgataaagcggtgaaggcagcgtgc
tttcagaacctggtccaggccaacgtgaggaacaagaggttcctgaaggatgctgtgcgg
aacatctcagccaagggcatcaccaactacaagggtggctttgagttggccttcgagcag
ctctcatcgttgaacgtgacccagggcagggcgttgtgtaacaagatcatcatgctgttc
actgacggaggagaggagcgggcccaggagatcttccagaagtataacgctgacaagaag
gtgcggatattcacattctcagtgggccaacacaactatgacaaaggaccaatccagtgg
atggcttgcaccaacaaagggtactactatgaaatcccctccatcggtgctatcaggatc
aacactcaggagtacctggatgtactgggcagacccatggtcaaagcaaacaacaaggcc
aagcaggttcagtggaccaacgtttaccaggacgctctggaactgggtctggtgatcaca
ggaacactgcccgttttcaacaagaccaacaccaaagctgacaaagagaggggacaacag
aggccccaaaaccagctgatcctgggagtgatggctatcgacgtgtctctggacgacatc
aaaagactaacgccgagatttacatttggaccaaatggctattactttgccattgacccc
aacggttatgtcttgctgcatcccaacctctgcccaaagaaccctaagttccaggagcct
gtgactctggacttcctggacgctgagctggaggatgagattaaagtagagataagaacg
aacatgattaatggggaaaccggctaccgcaccgtacacacactagtgaagtcccaggat
gagcggtacatagaccgaagccaaagatcgtacacatatgcccctgtaaagggtacagat
tacagtctagccttggtccttccagcgtacagcctgcattacatccatactactattgga
gacaccatcacccaggccaaattggaattgggggatgaggtctctgaaagcctgcaggaa
gacaagtttgaggagtatggatacactctcattgcaccaagggagtactgtaaggatctg
aagccgtctaaaaacaacacagagttcctgatggacttcaacgagtacatcgacaggaag
actcccaacaacccactgtgcaacgtggatctggtgaacagattgttgctggacgctggg
atcacgtcagacctcgtcaagcagtggagagatcagatgccaaatggagtcctggccagg
tttgtggccactgatggaggaatcactcgcatttatcccaaaaatgctggactagactgg
acagaggacccagagacgtacgagtcaagcttctataagaggagtctggacaatgacatc
tacatcttcacacctacaccctaccaggaggacaccaacatgactgaggactcagtcctg
gtgagcagagcagtgaatctggacattgatggagtcagactcaaaccagcagttgtggga
gtgaaactggacatcaatacctggatgaccaacttcatcaatgctactctgaagatgaac
tgtaaggacgagatctgtggttgtcagaggaatgatgagcatgtggattgtgtcatcctg
gatgatgggggattcctggtcatggccaatcgggatgaatacatcagtcagatcggccag
ttcttcgggatgatcgaccctatcctcatggtcaacctggtcaacatgtctctgttcacg
ctcaacaagacgtacgactaccagtcggtctgcgaccccaagagggagagcaaggggtcc
gcggcgggcctgcgctcagtctacgcgcccaccatagcagacattttgaacattggatgg
ttagcatcagcagcagcctggtcgatactacagcagttgttggttagcataacgttccct
aatttcctgcacgcagcggacaccgatgacgaaatacctgacatgtccaaggagagctgt
atcacagagcagactcagtacttctatgacaacgatgaaaagtccttcagaggaacgcta
gactgtgaaaactgctccaggatgttccatgctgagaagctgtggaagaccaacctggtg
tttgtcatcgccgacgccaaactcacctgcatgtcatgtgaccccaagcccttaatacag
gccgagcagccttctgagggaccagacccatgtgaaatggctgagaaaccaaggttccgg
aaaggtccagatgcctgtttcgataacaacgagagggaggaggactttgactgtggtggg
gcgtccgctctgagcccgtccctgttggccatggtggcgctgcagctagccctgctctgg
ctcctggccagctccacgcaccacgccgtcccctcgtga
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