KEGG   Coregonus clupeaformis (lake whitefish): 121543432
Entry
121543432         CDS       T08357                                 
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu04115  p53 signaling pathway
cclu04210  Apoptosis
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    121543432
   04115 p53 signaling pathway
    121543432
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    121543432
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz APAF1_C Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WHD_APAF1 WD40_Gbeta NB-ARC Beta-prop_EML Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st WDR90_beta-prop_4th CARD NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_WDR41 CFAP251_N Beta-prop_Aladin Beta-prop_NOL10_N DSE1_N WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR19_1st RMC1_N Beta-prop_VPS8 ASA1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N Ge1_WD40 eIF2A WD_LRWD1 Beta-prop_NWD2_C Beta-prop_Nup120_160 PROPPIN CARD_2 Tricorn_2nd WD40_RFWD3 WD40_like Beta-prop_SPT8 AAA_16 NACHT PAC11 nSTAND1 AAA_22
Other DBs
NCBI-GeneID: 121543432
NCBI-ProteinID: XP_041709227
LinkDB
Position
28:complement(33249531..33305757)
AA seq 1305 aa
MAMMEEGARSCLLQSRSSLEQDIRASYLMDHMISDGVLTGDEEERIRSKPTRREQAAALL
ELLLRKDNQAYISFYNALVRESYGDLASLLHNSLPLVSPEAEKSFSDAGTRYVQTVLSEG
GVPQRPVVFVSRPALVNRVREKLYRLQKEPGWVTVFGMAGSGKSVLAAEAVRDHALITEC
FPGGVHWLSIGQLDRADLLVRIQSLCFRLEQQCQEQDPSSSLHRPPGSLEEAKERLRFLM
LRRYPRSLLILDDIWDNSVLKAFDIQCRVLLTTRDRSLADCVSGSKSEVAVESGLEEDQA
LEILALYVNGKPQRLPEQARSIVRECKGSPLVVSLIGALLREFPDRWAYYLRTLQQKKFK
RIRKSSSYDYDALDQAMAASIQVLSEEHRELYIDLTVLEKDVKVPAKVLSVLWDLEPEEV
EDVLQDFVNKSLLFRDCHHRPYLYYLHDLQLDFLAEMNRSGLESLHSKVVRQYQQCYSQG
PPTSGDEECLYWFRFLTYHMAKANLTQELYSLMFSLDWVRTKAQIMGPAHLINDYVEYGA
ILDKENSEVRGHFQEFLSLNGHQLEQRPFPDVVQLALSQPDSSEVYRQALLQAQERATRG
GLYLDWVNKSSLKSLSRLVVQPHQGSIYSACFSHDGTKIASCGSSKTLRVFKSTSGEKLL
EIQAHDDEVLCCAFSPDDRLLATCSSDRKVKVWNVERGTLMRVFEDEHEEQVNHCQFTNT
RRRLLLATCSNDKFMNTKLWNLNKPSSQNTMFGHLEPVNHCCFSPDDAHLSTSSSDGTLK
LWEVSSANEWKSIDVADMFPEQSEQTEVMVKCSTWSADGRSIICAARNAVFVFDVETAAM
LLEIRTSRLSTVQYCHACPSSNLVAIALSHYAVELWDIKTNKKMADCSGHLSWVHGVQFS
PDGSLLLSCSDDQTVRVWETNKVHTSSAVCLKRDSDVLFNNGDIIVVAADNRNRLQVRNG
RTGAVMFQSEEQESRIRCTAICTQTSAVGLGREDGTIQVGGMTVRQVLRTIGWRTLQLLN
SHRGLVLALGLETGSVQVLEVPSGTPLATLQGHTRTVLHCQFTPEGHTLITSSEDTTIRV
WRWRTGECVVLEGHKEQVRCFSLLTTSPSSETHLLSWSFDGTIKVWDMSSGERLQDLMCH
QGAVLACDVSPDGQIFATTSADKTAKVWSSASWECVCPLNGHQDCVRSCRFSWDGRRLAT
GDDNGEIRLWNVKDGTLLKICSRDNKDAMDSLHGGWVTDLHFSPDNTVLLSTGGYIKWWN
VEKGEALQTFYPTGANLKRIHVSPDFSTFVTIDNIGILYILKKVE
NT seq 3918 nt   +upstreamnt  +downstreamnt
atggcgatgatggaggaaggggcgcggagctgcctgcttcagtcacgctccagcctggag
caggacatcagggcctcctacctgatggatcacatgatcagcgatggcgtgctgactggg
gacgaggaggagaggatcaggagcaagcccaccaggagagagcaggctgcggccctgctg
gagctgctcctgaggaaggataaccaggcctacatctccttctacaacgccctggtccgc
gagagctacggagacctggccagcctgctccacaacagcctgcccctggtctcccccgag
gccgagaagagcttctcagacgcgggcacccgctatgtccagacggtgctgagtgagggc
ggcgtgccccagagacccgtggtgtttgtgagccggccagccctggtgaaccgggtcagg
gagaagctctaccgattgcagaaggagcccggctgggtcactgtgttcggcatggccggc
tccggcaagtctgtcttggctgcggaggcagtccgagaccacgcactcatcacagagtgt
tttccaggaggagtccactggctgtccataggccagctggaccgggctgacctgcttgtg
aggatccagtcgctgtgtttccgcctggagcagcagtgccaggagcaagacccctcgtcc
tccctccaccggcctcctggctctctggaggaggccaaggagcgcctacgcttcctcatg
ctccgtcgttaccccaggtcgttgctgatactggatgacatctgggacaactcggtgctc
aaggcctttgacatccagtgtcgagtactgctcaccacccgagacagaagcctagccgac
tgtgtcagtggttctaagtctgaggtggcagtggagagtggtctggaggaggatcaggcc
ttggagatcctcgccctgtatgtcaacgggaaaccccagagactcccagaacaggcccgc
agcattgtcagagagtgcaaaggctcccccttggtggtgtccctaatcggggccctgctg
cgggagttcccggaccgctgggcctactacctgcgcacgctccagcagaagaagttcaag
cgtatccgtaagtcgtcttcgtatgactacgatgcccttgaccaggccatggctgccagc
atccaggtcctgtctgaggaacacagggagctgtacattgacctcaccgtgctggagaag
gacgtcaaagtacctgccaaggttctgtcggttctgtgggatctagaaccggaggaggtg
gaggacgttctccaagactttgtgaacaagtccctactgttccgtgactgtcaccaccgg
ccctacctctactacctccacgacctccagctggacttcctggctgagatgaaccgctct
ggtctagagagcctccactctaaggttgtgcgtcagtaccagcagtgctacagccagggt
ccccccacctcaggagatgaagagtgcctctactggttcagattcctcacctaccacatg
gccaaggccaacctcacacaggagttgtactctctgatgttctctctggactgggtcaga
actaaagctcagattatgggacctgctcatctcatcaatgactatgtggagtacggcgcc
atactggacaaagagaacagcgaggtgcggggccacttccaggagttcctgtctctgaat
ggccaccagttggagcagcgtccgttccctgacgtagtgcagctggccctgtcccagcca
gactcctccgaggtgtaccgccaggccctgctgcaggcgcaggagagggccaccagaggg
ggactctaccttgactgggtgaacaagagtagtcttaagagtctgtctcgtctggtggtc
cagccccaccagggatccatctactctgcctgcttctcccacgacggcaccaagatcgcc
tcctgtggctccagcaagacactgcgagtgtttaagagcacctctggggagaagctgctg
gagatccaggcccatgacgatgaggtgctctgctgcgccttctcccccgatgatcgtctc
ctagcaacctgctccagcgataggaaggtcaaggtgtggaacgtggagcgtgggactctg
atgagggtgtttgaggacgaacacgaggagcaggtcaaccactgtcagttcaccaacaca
cgccgacgcctcctactggccacctgctccaacgacaagttcatgaacaccaagctgtgg
aacctcaataaaccctcctctcagaacaccatgtttggtcatttggagcctgtcaatcac
tgctgtttctcccctgatgatgcccacctctccacctcttccagtgacggaaccctgaag
ctgtgggaggtgtcctcggccaatgagtggaagtccatagatgtggcggacatgttcccg
gagcagagtgagcagacggaggtcatggtgaagtgcagcacctggtcagcagacggcagg
agcatcatctgtgctgccaggaacgcagtctttgtgtttgacgtagagacggcggccatg
ttgttggagatccggaccagtcgtctgagcacggtgcagtactgtcatgcctgtcccagc
agcaacctggtggccatcgcactgtcacactatgctgtggagctgtgggacataaagacc
aataagaagatggctgactgtagtggtcacctgagctgggtccacggagtccagttctcc
cccgacggatctctactgctctcttgctctgacgaccagaccgtcagggtatgggagact
aacaaggtccacacctcctcggctgtctgtctgaagagggactctgacgtgctctttaac
aacggtgacatcatcgtggtcgccgccgacaaccgcaacagactgcaggtgaggaatggg
aggacaggagcggtgatgttccagtcagaggagcaggagtctcgtatccgctgcactgct
atctgcacacagacctcagccgtggggctgggacgagaggatgggaccatacaggtagga
gggatgacagttaggcaggtgctgaggaccatcggatggaggactctacagctgctgaac
tctcacagggggttggtgctggcgttagggctagagacaggcagtgtgcaggtgttggag
gtgccgtcggggacccccctagccactctgcagggtcacaccaggacagtgctccactgc
cagttcaccccggagggacacacactgatcacctcctctgaggacaccaccatacgggtg
tggaggtggaggacaggtgagtgtgtggtgctggagggccacaaggagcaggtcagatgc
ttctctctgctcaccacctcaccctcctcagagacacatctcctcagctggtcctttgac
ggcaccatcaaggtgtgggacatgtctagtggtgaacggctgcaggacctaatgtgtcac
cagggggcggtgctagcctgtgacgtgtcgcctgatggacagatcttcgccaccacctcc
gccgacaagaccgccaaggtgtggagcagtgcatcgtgggagtgtgtgtgcccgttgaac
ggccaccaggactgtgtccgcagctgccgcttctcttgggacggtcggcgcctagcgacc
ggcgacgacaacggagagatacggctgtggaacgtgaaggatggtactctgctaaagatc
tgttcccgtgacaacaaggacgccatggactctctgcacggaggatgggtgactgacctg
cacttctccccagacaacaccgtgctgctgtctacaggaggatacattaagtggtggaat
gtggagaaaggggaggccctccagaccttctacccgacaggagccaatctgaagaggatc
cacgtgtcacctgacttctccaccttcgtcaccatcgacaacatcggaatcctctacatc
ctgaagaaggtggaatga

DBGET integrated database retrieval system