Coregonus clupeaformis (lake whitefish): 121544573
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Entry
121544573 CDS
T08357
Name
(RefSeq) platelet-derived growth factor receptor beta-like isoform X1
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
cclu04518
Integrin signaling
cclu04519
Cadherin signaling
cclu04540
Gap junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121544573
04020 Calcium signaling pathway
121544573
09133 Signaling molecules and interaction
04518 Integrin signaling
121544573
04519 Cadherin signaling
121544573
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121544573
04540 Gap junction
121544573
09142 Cell motility
04810 Regulation of actin cytoskeleton
121544573
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121544573
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cclu04090
]
121544573
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121544573
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
121544573
CD molecules [BR:
cclu04090
]
Proteins
121544573
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
I-set
Ig_3
VEGFR1-3_N_Ig-like
Ig_2
ig
Ig_VEGFR-1-like_5th
V-set
C2-set_2
RIFIN
VEGFR-1-like_Ig-like
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
121544573
NCBI-ProteinID:
XP_041710466
LinkDB
All DBs
Position
3
Genome browser
AA seq
1096 aa
AA seq
DB search
MRSVRVSTLHLTTLLTALLHICPEFCCLEISPSNSEVVMAAGDSMIFTCSGWGTVGWRFK
RDDNVPYFGVENQNTTSVLILDNVTWSQTGVYVCAEAWTDETTEVAVFVPDPDVWFIESS
HGMVTKTSEEGTIPCVVTNPQINVTLYERDSDMHLKGVYIPSEGYRAPLEDRTYVCRGEL
NGEEKESQAFYVFSIAVPETIDAYINASKTVLKQGEPLTVNCTVHGVELVYFSWDYPNRD
VDSIEPLTDVLSSQRMRSCLIVSKATLANTGQYVCHVHEGVQDQSATANVNITVLEQGFV
ELRSVQERNISAQLHQNVELRVEIEAYPPPRVRWTKDDATVNGDNTVITRQEHETRYVST
LTLVRIRTEQKGLYTVHVANGDDTKKLTFDLEVKVPPQITDLSDHHLPGKRHAVTCVAEG
VPSPTIQWFSCDTMLKCSNRSTVWQPLVSDPETLSVQTNVSFNESRKVGQIRSQVIFHKP
QQVTVRCEASNERGLRRRDVKLVSSTLFSQVAVLATVLALVVILIISIIILIAVWRKKPR
YEIRWKVIESVSVDGHEYIYVDPIHLPYDLAWEMPRDNLVLGRTLGSGAFGRVVEATAYG
LGHSQSSTKVAVKMLKSTARRSETQALMSELKIMSHLGPHLNIVNLLGACTKQGPLYLVT
EYCRYGDLVDYLHRNKHTFLQYYAEKNQEDSGCRISGGSTPLSQRKGYVSFGSECDGGYM
DMSKDEPTVYVPMQELKDTIKYADIQASPYESPYQHDLYQEQDQNTVDSALFISDSTTLS
YSDLIGFSYQVAKGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMHDSNYIS
KGSTFLPLKWMAPESIFHNLYTTLSDVWSYGILLWEIFTLGGTPYPDLPMNELFYSALKR
GYRMAKPNHATDEVYEVMQKCWDEKHEKRPEFSFLVHTMGNMLTDSYKKRYCQVNDEFFK
SDHPAVVRTKPRLSSPFPTPAITPSTAPDTPQDLNPYPLTGDFRPEADGEEVTASYNDYI
IPIPDPKPEEEVFSEANSLPTESPASSLALEEDGADSISQETAEADTIPEEDGLHANQAL
IPLESSGTPEVEDSFL
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgtcagagtatccactctccatctgacaaccctacttacagctcttctacac
atctgtcctgagttctgttgcctggagatctcccctagcaacagtgaagtcgtcatggca
gcgggtgactcaatgatcttcacctgttctggctgggggacggtcggatggaggttcaag
cgggatgacaacgttccctattttggagtggagaaccagaacacaaccagtgttctcatt
ctggacaacgtgacgtggagccaaacgggagtatacgtctgtgccgaggcttggactgac
gagactacagaggtggcagtctttgtgccggaccctgatgtgtggttcattgagagttcc
cacggcatggtgaccaagaccagcgaggaggggaccatcccctgtgtggtcaccaacccc
cagatcaacgtcaccctctacgaaagggacagtgacatgcacctgaagggggtctacatc
cccagtgagggctacagagcgcccctggaggacaggacctatgtttgtcgaggagagctg
aacggggaggagaaagagtcccaggctttctatgtcttcagtattgctgtcccggagacg
atcgacgcctacatcaatgcgtccaagacggtgctgaagcagggcgagcctctgacagtg
aactgcacggtgcacggagtggagctggtctacttctcctgggactatcccaatagagat
gtggactccattgagcctctgactgacgtcctgtcatcgcagaggatgcgctcatgcctc
atagtctccaaggcaacgctggccaacactggccagtacgtgtgtcatgtccacgagggt
gtccaggaccagagcgccacagccaacgtcaacatcaccgtcctcgagcaaggcttcgtg
gagctgagatccgtccaggagcgtaacatctcggcccagctgcaccagaacgtagagctg
agggtggagattgaggcctaccctcctccacgtgtgcgctggaccaaagatgatgccacg
gtcaatggggacaacaccgtcatcaccaggcaggaacatgagaccaggtacgtcagcacg
ttgaccctggtgaggatcaggacagaacaaaaaggcctctacaccgttcacgtcgccaac
ggagatgacaccaagaaattgacctttgatctggaggtcaaagtcccccctcagatcaca
gacctgtcggaccaccacctcccagggaagaggcatgcagtgacctgtgtggctgaggga
gtcccctcccccaccatccagtggttcagctgtgacaccatgctcaagtgcagtaatcgg
agcacagtgtggcagcccctagtgtcagaccctgagaccctgagcgtccagaccaacgtc
agcttcaacgagagccgtaaggtgggccagatccgcagccaggtcatcttccacaagccc
cagcaggtgaccgtccgctgcgaggccagcaatgagagaggactccgcaggagggacgtc
aaactggtgtccagcactttgttctcccaggtggcagtgttggctacggttctagccctg
gtggtcatcctcatcatctccatcatcatcctcatcgctgtgtggaggaagaagcctcgc
tacgagatcaggtggaaggtgatcgagtcagtgagtgtggacggacatgagtatatctac
gttgaccccatccatctgccctatgaccttgcctgggagatgccccgagacaacctggtg
ctgggtcgtactcttgggtccggagcattcggcagggtggtcgaagcgaccgcatatggt
ctcggtcattcccagtccagcacgaaagtggcagtgaaaatgctcaaatctacggccagg
aggagtgagacacaggctctgatgtcagagctgaagatcatgagccacctggggcctcac
ctcaacatcgtcaacctgctgggggcctgcaccaaacagggccctctctacctggtgaca
gagtactgtcgctatggagacctggtggactacttacacaggaacaagcacacgttcctg
cagtactacgctgagaagaaccaggaggactctggctgccgcatctctggagggagcact
cctctcagccagaggaaaggctacgtgtcatttggcagtgagtgtgacggtggttacatg
gacatgagtaaggacgagcccacagtgtacgtccccatgcaggagctgaaagacaccatc
aaatacgctgacatccaggcttctccatatgagtctccctaccagcacgacctttaccag
gaacaagaccagaacacagtggactctgccctgttcatcagtgactctaccaccctcagc
tattctgacctcatcggcttcagctaccaggtggccaagggcatggagttcctcgcctcc
aagaactgtgtccatcgtgacctggccgccaggaacgtgttgatctgtgaggggaaactg
gtgaagatctgtgactttggcctagccagagacatcatgcacgactccaactacatctcc
aaaggcagcacgttcctgcccttgaagtggatggccccagagagtatcttccataacctg
tacaccaccctgagtgacgtgtggtcctacggcatcctcctctgggagatcttcaccctt
ggaggaaccccttaccctgaccttccaatgaatgagctgttttacagtgccttaaagaga
ggctatcgcatggccaaacctaaccacgccacagacgaagtttatgaagtgatgcagaag
tgctgggatgagaagcatgagaagaggccagagttctcctttctggtgcacaccatgggg
aacatgctcactgacagctataaaaagagatactgccaggtcaacgacgagttctttaag
agtgaccacccggccgtggtccgcaccaaacccaggctctcctcccccttccccacccca
gccatcaccccctccaccgcccctgacaccccccaggacctcaacccctaccccctaact
ggagactttagaccggaggcagatggagaggaagtgacggcctcctacaacgactacatc
atccccatcccggaccccaagcctgaggaggaagtcttctccgaggccaacagcttgcca
acggaaagccccgcgagttctctggctctggaagaggacggggctgattccatctcccag
gagacagcagaggcagacaccattccagaagaggacggtctccatgccaaccaggctctg
attccactggaatcttctggaacaccggaagtggaagacagcttcctgtag
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