Coregonus clupeaformis (lake whitefish): 121544723
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Entry
121544723 CDS
T08357
Name
(RefSeq) TNF receptor-associated factor 3-like isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04620
Toll-like receptor signaling pathway
cclu04621
NOD-like receptor signaling pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121544723
04621 NOD-like receptor signaling pathway
121544723
04622 RIG-I-like receptor signaling pathway
121544723
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121544723
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
CCDC39
NOCA1_mid
PEA2_C
CEP89
Sina_ZnF
FapA
ODF2_C
CALCOCO1
zf-RING_UBOX
BLOC1_2
Rod_CreS
DUF1664
CCDC18_1st
DUF6779
PIN_8
zf-RING_6
YonD_C
DUF7491
PUMA_CC
V_ATPase_I
TolA_bind_tri
DUF745
Exonuc_VII_L
DUF7856
GAS
Motif
Other DBs
NCBI-GeneID:
121544723
NCBI-ProteinID:
XP_041710747
LinkDB
All DBs
Position
29:complement(12468306..12524904)
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AA seq
605 aa
AA seq
DB search
MVYFRMGMQPLNTSMMVPAWICIEPPEQVMSAGRNADMRELQIPLQHRSPSLAALSLAQR
PWPSDPDAGFLPQRGGFWDHFIATPEPKYCCEACRLVLCNPRQTECGHRFCETCISEQLS
KPNPVCPADSEPLFKDKIFRDVCCHREIMALRVYCRSEKNGCKEQMSLQQVMDHLNVCLY
FEVPCPLGKCKEKMMRKDIPEHLSWKCKHRETTCEFCMHKMAMTELQKHKETVCPSFPVA
CPNHCTSPSILRSELTSHQHECPKAHVTCSFIRFGCNFKGLNQDMRDHESSFASEHLRLM
ATRNTTLEAKVEDVKGELLERYKVLPGLSSRLSETESQYEEMRENNRQLEQKLTTMQNLM
SSHSEKLLEMELELRSLRTIREEVETLRGTVESIRSRVATLEGGRVGANPATHTLGSLET
QLSRQDDILSVHEIRLADMDLRFQVLETASFNGTLIWKIRDYKRRKQEAVASKTLSLYSQ
PFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLLWPFKQKVTLMLMDQGP
ARKHLGDAFKPDPNSSSFRRPTAEMNIASGCPLFVAQTVLENGTYIKDDTIFIKVTVDTS
DLPDP
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggtctatttccgcatgggtatgcaacccctgaacaccagcatgatggttcctgcctgg
atctgtatcgaaccaccagagcaggtcatgtcagcagggcggaacgcggacatgcgggag
ctgcaaatccccctccagcatcgctctccctccctggctgctctctctctggcccagcgc
ccctggcccagcgaccccgatgcaggcttcttaccgcagcgcgggggcttctgggaccac
ttcatagccactccagagcccaaatactgctgcgaggcctgcaggctagtgctctgcaac
cccaggcagacagagtgtggacaccgcttctgtgaaacctgcatctctgagcagctcagc
aaaccgaatccagtatgtccagcggatagtgagccgctgttcaaagacaagatcttccgt
gacgtgtgctgccatagagagatcatggctctgagagtgtactgcaggagtgagaagaat
ggctgtaaggagcagatgagtctacagcaggtcatggatcatttgaatgtgtgtctgtat
tttgaggtgccatgccctttgggaaagtgcaaagagaagatgatgcgcaaagacattcct
gaacacttgagttggaaatgtaaacacagggagaccacctgtgaattctgcatgcataag
atggccatgactgaattacagaaacacaaagaaaccgtttgtccttcatttccggtggcc
tgccccaatcattgtacttctccctccatcttacgaagcgagctgacaagtcatcaacat
gagtgccccaaggctcatgtcacctgctcctttatccgctttggatgcaatttcaagggt
ctcaaccaagacatgagggaccatgaatctagctttgcctctgaacacctgcggttgatg
gcaaccaggaacactacactggaggccaaggtggaggatgttaaaggagagcttctggag
cgctacaaggttctgccaggcctgagcagccgtctgtctgaaacagagtctcagtacgag
gagatgagggagaataacagacagctggagcagaagctcactaccatgcagaacttgatg
agttcccactctgagaagcttttggagatggagctggagctgaggtctctgaggactatc
cgagaggaggtggagacactccgaggcaccgtggagagcattcgttccagggtcgcaacg
ctagagggaggacgggtcggggccaacccagccacacacacactaggttctttagagaca
cagctctcccgtcaggacgacatactgagtgtccacgagatccgcctggccgacatggac
ctgcgcttccaggtcctagagactgcttccttcaatgggacgctcatctggaagatccgt
gactacaagcggcggaaacaagaagccgtggcttcaaagaccctgtctctctacagccag
cctttctacactggctactttggctacaagatgtgtgcccgggtctacctgaacggagat
ggcatggggaaaggaacccatctgtctctgttctttgtggtgatgcgtggcgaatacgac
gccctcctgctctggccctttaaacagaaggtgactctgatgctgatggaccagggccca
gccaggaagcacctaggggatgcctttaaaccagaccccaacagcagcagcttcagacgg
cccacggcagagatgaacatagcctcgggctgcccgctgttcgtagcccagactgtgctg
gagaacggtacttacatcaaggacgataccatcttcattaaggtcacagtggacacgtca
gacctccctgacccctga
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