Coregonus clupeaformis (lake whitefish): 121544935 Help Entry 121544935         CDS       T08357                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04115   p53 signaling pathway cclu04145   Phagosome cclu04148   Efferocytosis cclu04350   TGF-beta signaling pathway cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     121544935   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121544935  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121544935    04148 Efferocytosis     121544935   09143 Cell growth and death    04115 p53 signaling pathway     121544935   09144 Cellular community - eukaryotes    04510 Focal adhesion     121544935   09142 Cell motility    04820 Cytoskeleton in muscle cells     121544935  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121544935   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121544935 Membrane trafficking [BR:cclu04131]  Endocytosis   Phagocytosis    Opsonins     121544935 Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121544935 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C EGF_3 TSP1_ADAMTS cEGF TSP1_CCN EGF Laminin_G_2 Motif Other DBs NCBI-GeneID:  121544935 NCBI-ProteinID:  XP_041711133 LinkDB All DBs Position 29:complement(25824742..25834595) Genome browser AA seq 1172 aa AA seqDB search MKLTGVFLLLVLWNCEGSRVAESRDDNSVYDLFELVKVNKRHQGVTLVKGADPYSPAYKV LNADLIPPVPEISFRDLIDSIQAERGFLLLVNFKQFKKTRGSLLTVEKDDGSGPLFEIIS NGKAQTLDVVYSTGNKQQVVSIEDADLATGHWKNITLFIQEDRAQLFVGCEEINISEMDV PIQKVLTHEVADIARLRIGKGAVKDRFMGVLQNLRFVFGTTLESILRNKGCQSSATLTDV MTLDNSVNGSSPAIRTDYTAHKTKDIQQVCGFSCEDIASMFKELKGIGVVVKQLSNELNR VNKESTLLMNQMNIHSGVCLHNGIVHKDKDEWTVDDCTECTCQNSATVCRKISCPLMPCA NATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINSNCEGTSV QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQGQG RETEVCQKSPCPINGGWGPWSLWDTCSVTCGGGLQTRQRLCNNPAPKYRGKECQGDTKTS QLCGKEDCPINGCLSNPCFAGAKCTSFDNGSWKCGSCPVGYTGDGINCKDIDECKEVPDA CFTLNGVHRCENTDPGYNCLTCPPRYSGPQPFGRGVEQATAKKQVCTPRNPCQDGSHDCN KNANCIYLGQFSDTMFRCECKPGYAGNGHICGDDTDLDGWPNKDLLCVENATYHCKKDNC PNLPNSGQEDHDKDGLGDACDHDDDNDGIPDDRDNCPMVYNPAQYDVDTDDVGDRCDNCV HESNPDQVDTDNNGEGDACAIDIDGDGILNERDNCPYVYNVDQRDTDGDGVGDHCDNCPL EHNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDDKDNCRLAFNPDQLDSDGDGRGDICKDDFDQDNILDIYDVCPENFAISETDFR RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTDR DDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGVSIKVVNSTTGPGEHLRN ALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI YDKTYAGGRLGMYVFSQEMTYFSDLKYECRDS NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagctgacaggagtctttctccttttggtgctttggaattgtgagggcagcagggtg gcagagagtagagatgataacagtgtatacgacctgttcgagcttgtgaaagtgaacaaa aggcaccaaggagttaccttggtaaaaggcgcagatccttacagcccagcctataaggtc ctgaacgcagacctgatccccccggttcccgagatctccttcagggacctcattgattcg atacaagctgagaggggattccttctcctggtcaacttcaagcagttcaagaaaaccagg ggcagtcttttgactgtggagaaggatgacggatcaggaccgttattcgaaataatttct aatggcaaggcgcaaactctggatgtggtatactccaccgggaacaagcaacaggtagtg tccatagaagatgcggatctggcgaccggacattggaagaatatcacgctgttcattcag gaggatcgtgcccagctgttcgtggggtgtgaagagatcaatatatcagaaatggatgtg cccatccaaaaggtcctgacgcatgaggttgccgacattgcccgtctgaggatcggaaaa ggagctgtgaaagatagatttatgggagtgcttcagaacttgcgcttcgtttttggaacc actttggagtcgattttacgcaataagggatgccaaagctctgcaactttgactgatgtc atgaccctggacaactcagtaaatgggtccagcccagcaataaggactgattacactgcc cacaaaaccaaagatattcaacaggtctgcggcttttcctgtgaggatatcgccagcatg ttcaaggagctcaagggaatcggtgtggttgttaagcagctgtcaaatgagctcaacaga gtgaataaggagagcactctgctcatgaaccagatgaacatccacagtggggtctgtctt cacaacggcattgtgcacaaggacaaagatgagtggaccgtggacgactgcacagagtgt acctgccagaactctgccactgtgtgtcgcaaaatctcttgccccctgatgccctgtgcc aatgccaccgtgcctgatggagagtgctgcccacgttgtggaaccccgagtgactatgct gaggatggctggtccccctggtctgaatggacccattgttctgtgtcttgtggacggggt atccagcagcgaggccgctcctgcgaccgcatcaacagcaactgcgagggcacctctgtg cagacccgcgactgctaccctcaggaatgtgacaagcgtttcaagcaggatggtggctgg agccactggtctccctggtcctcctgctctgtgacctgtggtgagggagtcatcacccgc atccgcctctgcaactcccccactccccagatgggaggcagagactgccaaggacagggc cgagagacagaggtctgccagaaatcaccttgtccaattaacggaggctggggaccctgg tctctgtgggacacctgctctgtcacctgtggaggtggactccagactcgccagcgtctc tgtaacaaccccgcccccaagtacagagggaaggaatgtcagggtgacaccaaaacatcc caattgtgtggcaaagaggactgccctatcaatggctgtctgtccaacccctgctttgct ggagctaagtgtaccagctttgacaatggttcctggaagtgtggctcatgcccagtgggc tacaccggagacggcatcaactgcaaggacatcgacgagtgcaaggaggtccctgatgcg tgcttcacactcaacggagtccaccgctgtgagaacactgatcctggctacaactgcctt acctgcccccctcgctactcaggaccacagcccttcgggaggggagtggagcaggccaca gccaagaaacaagtgtgcacaccccgtaacccctgccaagatggcagccatgattgcaac aagaatgctaactgtatctacctgggtcagttcagcgacaccatgttccgctgtgagtgc aaacctggttacgctggcaacggccacatctgtggagatgacaccgacctggatggatgg cccaacaaagacctcctgtgtgtggagaacgccacctaccactgcaagaaagacaactgt ccaaaccttcccaactctgggcaggaggaccacgacaaagatgggcttggtgacgcttgc gatcacgatgatgacaacgatgggatccctgatgatagggacaactgcccaatggtctac aaccccgctcagtatgatgtggacacagatgacgttggtgatcgctgtgataactgtgtg catgagagcaaccctgaccaagtcgacacagacaacaacggagagggggatgcctgtgct attgatatcgacggtgatggtattctaaatgagagggataactgcccctatgtctacaat gtggaccagagagacactgacggggatggagtgggagaccactgcgacaactgccctctt gagcacaacccagaccagattgactctgactcagatcgtgtgggagacaagtgcgacaac aaccaggacattgatgaggacggtcaccagaacaacttggacaactgtccctatatcccc aatgccaaccaggccgaccacgacaaagacggcaagggtgacgcctgcgaccacgatgac gacaatgacggtatccctgacgacaaggacaactgcaggctggccttcaaccctgaccag ctggactctgatggtgatggtcgtggagatatttgcaaagatgactttgaccaagacaac atacttgatatatacgatgtgtgccctgagaactttgccatcagtgagacggacttccgc aggttccagatggtaccactggaccccaagggcacctcccagatcgaccccaactgggtg gtccgccaccagggcaaagagctggtgcagactgtcaactgtgaccctggcatcgctgtt gggttcgatgagttcaacgcagtggacttcagtggaacgttcttcatcaacacagacagg gatgatgactacgctggctttgtgtttggctaccagtccagctccaggttctatgtggtg atgtggaagcagatcacacagacctactggtcccacaccccgactagagctcagggctac tccggagtgtccatcaaagtagtcaactccaccacaggacctggggagcatctgaggaat gccctttggcacactggtgacactgctggacaggtgcgtactctgtggcacgaccccaag aacatcggctggaaagactacaccgcctacagatggcacctgatccacaggcccaagtct ggactcatcagagttgtgatgtatgaaggcaagagaatcatggctgattctggaaatatc tatgacaagacttatgctggtggaagactaggcatgtatgtcttctctcaggagatgaca tacttctcagacctcaaatacgaatgcagagattcttaa

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