Coregonus clupeaformis (lake whitefish): 121546012
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Entry
121546012 CDS
T08357
Name
(RefSeq) TAR DNA-binding protein 43-like isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121546012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121546012
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121546012
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Gene cluster
GFIT
Motif
Pfam:
TDP-43_N
TDP-43_C
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
Motif
Other DBs
NCBI-GeneID:
121546012
NCBI-ProteinID:
XP_041712910
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Position
30:7744941..7758386
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AA seq
399 aa
AA seq
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MAELYIRVAEDENEEPMEIPSEDDGTVLLSTVAAQFPGACGLRYRNPVSQCMRGVRLVEG
ILHAPENDWGSLVYVVNYPKDNKRKMDEMDAASAVKMKRGIEKTSDLIILGLPWKTSEQD
LKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQSKVISQRHMIDGRWCDCKLPN
SKAGPDEPMRSRKIFVGRCTEDITTDELRQFFMQYGEVTDVFIPKPFRAFAFVTFADDQV
ASALCGEDLIIKGVSVHISNAEPKHNNSRQMMDRGAGGFGGQGYGGGRGGLGSSGSSGVN
FGGLSLNPAMMAAALQSSWGMMGMLANQQGQTNAAGTTAAGQTSANRDQSQAYSSSSTSY
SSPSSASLGWAAGTNSASSSGFSSGFGTSMESKSSGWGM
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcggagttgtacattcgcgtggcagaggatgaaaacgaagagccaatggagattcca
tctgaggatgatgggacggttttgctgtcaacagtagcagctcagtttcccggagcgtgc
ggcctacgttacaggaaccctgtgtctcagtgcatgcgaggcgtccgtctagttgagggt
atcttgcatgcacctgagaatgactggggtagtctggtgtacgtcgtcaactacccaaaa
gataacaaaaggaaaatggatgaaatggatgctgcctctgcggttaaaatgaagcggggt
atcgagaaaacatcagacctcattatccttgggttgccttggaaaacatctgagcaagat
ttgaaagactacttcgccacttttggagaagtcatcatggtgcaggtcaaaagagatgtt
aagactgggaactcaaagggttttggctttgttcggttcactgagtacgagactcaatcc
aaagtgatttctcagcgacacatgattgacggaagatggtgtgactgcaaactacccaac
tctaaggcaggtcccgatgagcccatgcgcagccgtaaaatatttgttggccgctgcaca
gaggacataaccactgatgagctccggcagttcttcatgcagtatggtgaggtcaccgac
gtcttcattcccaaacccttccgagcgttcgcctttgtcactttcgcagacgaccaggtt
gcctcagccctgtgtggagaggacctgatcatcaagggcgtcagtgtgcatatctccaac
gccgagcctaagcacaataatagtaggcaaatgatggatcgtggtgccggtgggttcggg
ggccagggctatggcggtggtcgtggagggctagggagcagtggcagtagcggggtgaat
ttcggggggcttagccttaacccagccatgatggccgccgctctgcagagcagctggggc
atgatgggtatgctggctaaccagcaaggtcagaccaatgcggcaggcaccaccgccgcc
gggcagaccagtgccaaccgagatcagagccaggcctatagctctagcagcaccagttac
agcagccccagctcagctagtctagggtgggctgcaggcaccaactctgcctccagcagt
gggttcagctctggctttgggacctctatggagtcaaagtcatcaggttggggaatgtag
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