Coregonus clupeaformis (lake whitefish): 121546289
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Entry
121546289 CDS
T08357
Name
(RefSeq) interferon regulatory factor 6-like isoform X1
KO
K09446
interferon regulatory factor 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121546289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121546289
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
121546289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
121546289
NCBI-ProteinID:
XP_041713404
LinkDB
All DBs
Position
Unknown
AA seq
526 aa
AA seq
DB search
MMSVQPRRIRLKPWLLAQVNSGRYPGLQWLSPDHRLFQIPWRHATRHLLTTEEENTIFKA
WALETGKYQEGLDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVQPYKIYEVCDQPCN
GDTFDEDEEEMPNIFGLSIDPIISDPPSFQSFPTAHRIDVPFSSPLNDRYGTPHHTPMYP
SPNMRSNPNGGITMATDLPQPTMVPPEFSAHVPLVVKLEHGVFVQPGPAGPSNGLGMGGG
SMHPPVVTEMPPMVPSAASVAPVAPNPGAAPMEAMSGVQNQEEGQAVPPYKYDLLNSLPL
TDLDMRFQYRGRTMGSLTVSNPQGCRLYYGHLEPTPEQVDLFGPVTLNQVLFPGSADIQN
EKQRFYTEHLLDVMDRGLILEIWEQDIYAIRLCQCKVYWSGPGVDEQGPPNPMERERKYK
VFSLNNFLHGLILFQKGETPTPPPFELYFCFGEDWPDQQKPKEKKLIVVQVVPVVARILT
EMFSGELSWSTDSIRLQISNPDLKDQTVEQFKELQRLLQSQHGLGP
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtgtgcagcctcggaggatccgcctaaagccctggctgttagcccaggtgaac
agcgggaggtaccccggcctgcagtggctcagcccggaccaccggctcttccagatcccc
tggagacacgccacaagacacctgcttaccactgaggaagagaacaccatcttcaaggcc
tgggctctggagacagggaagtaccaggagggtctggatgagcctgaccctgccaagtgg
aaggccaacctgcgctgtgccctcaacaagagccgggagttcaaactgaaatacgacggc
accaaggagacacctgtccagccctacaagatctacgaggtctgtgaccagccctgcaat
ggagacacatttgatgaagatgaggaggagatgccgaatatttttggtctctccattgac
cccataattagtgacccacccagttttcagtcattccctactgcacataggatagacgtt
cccttcagctcccccctcaatgacagatatggcacaccccaccacacccctatgtacccc
agtcccaacatgcgctccaatcccaatgggggcattaccatggcaacggatctccctcag
ccaaccatggttcccccagagttttctgcccacgttccattggtggtgaagttggaacat
ggggtctttgtgcaacctggacccgcaggaccctccaacggcctggggatgggtggaggg
agcatgcaccctcctgtggtcactgagatgccccccatggttccttctgctgcatctgtg
gctccggttgcccctaacccaggcgccgcccccatggaggccatgtcaggagtccagaac
caggaagaagggcaggcggtaccaccctacaaatatgacctgctgaacagcctgccattg
actgacctggacatgaggttccagtaccggggtcgtacgatgggctccctgactgtgagt
aacccccagggctgccggctgtactacggccacctggagcccacaccggagcaggtggac
ctgttcggccccgtcaccctcaaccaagttctcttccctggctcggccgacatccagaac
gagaagcagcgattctacacagagcacctgctggacgtgatggaccgaggcctgatcctg
gaaatctgggaacaggatatatacgctatcaggttgtgtcagtgcaaggtgtattggtct
gggccgggcgtggacgagcaggggcctcccaaccctatggagagggagaggaagtacaaa
gtgttcagcctcaataacttcctgcacgggctcatcttgttccagaagggtgaaactccc
accccacccccgtttgagctctacttctgctttggggaggactggccagaccaacagaaa
cccaaggagaagaagctcatcgttgtgcaggtggtcccggtggtggcgcggatcctaaca
gagatgttttctggagagctgtcctggtccacagacagcatccggctgcagatctccaac
ccagacctgaaggaccagacggtggagcagttcaaggagctccagaggcttctccagagc
cagcacggcctgggaccctga
DBGET
integrated database retrieval system
