Coregonus clupeaformis (lake whitefish): 121546400 Help Entry 121546400         CDS       T08357                                  Symbol traf6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04010   MAPK signaling pathway cclu04120   Ubiquitin mediated proteolysis cclu04140   Autophagy - animal cclu04144   Endocytosis cclu04620   Toll-like receptor signaling pathway cclu04621   NOD-like receptor signaling pathway cclu04622   RIG-I-like receptor signaling pathway cclu05132   Salmonella infection cclu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     121546400 (traf6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     121546400 (traf6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     121546400 (traf6)    04140 Autophagy - animal     121546400 (traf6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     121546400 (traf6)    04621 NOD-like receptor signaling pathway     121546400 (traf6)    04622 RIG-I-like receptor signaling pathway     121546400 (traf6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     121546400 (traf6)   09171 Infectious disease: bacterial    05132 Salmonella infection     121546400 (traf6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121546400 (traf6)    04121 Ubiquitin system [BR:cclu04121]     121546400 (traf6) Enzymes [BR:cclu01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      121546400 (traf6) Membrane trafficking [BR:cclu04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     121546400 (traf6) Ubiquitin system [BR:cclu04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     121546400 (traf6) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 Sina_ZnF zf-C3HC4_4 zf-RING_5 U-box zf-TRAF_2 DM TRAF3_RING RING_XB3-XBAT31 zf-RING_11 zf-rbx1 Phage_GP20 Motif Other DBs NCBI-GeneID:  121546400 NCBI-ProteinID:  XP_041713596 LinkDB All DBs Position 35:complement(42727872..42736311) Genome browser AA seq 551 aa AA seqDB search MSCFESEKSSLENDEACCGGAAASQLSNCALAMLEKEGSDSALSPTESTPTSLQGGAPLQ GYDVEFDPPLESKYECPICLMALRAAVQTPCGHRFCRSCIEKSIRDTGQRCPVDNEVLRE DQLFPDNFAKREILSLTVRCTNVGCTDKMELRRLDGHVTKCEFATVPCPLCQDAVWKSKL EEHQSQHCQRRPVSCPDCVESFVYEDSKLHESLCPFANVVCQYCGMELIRDQLESHYDTE CPKAPIACTFSTFGCREMMQRNDLAQHMQEFTQMHMRCMAEYLHSHSLTGYTQPPSSEDR GAAAAELGARVGASGGGAPCQCCGELQTMRETTQQLEGRLVRQDHQLRELSVQAGLVAEL RRKVTSLEENLKELEAKQCQGVYVWPLEGFSAYLRTQAAGQPVVVHSPGFYTGRPGYKLC LRLHLQTPSAQRCSNYISLFVHTMQGEFDGQLPWPFQGTIRLAVLDQGPEAQHHVEVMET KPDLQAFQRPTIQRNPKGFGYVTFLHLVQLQQRGFVHDDTLLVRCEVTPRFDSALRREGA AMQPRGPEASL NT seq 1656 nt NT seq  +upstreamnt  +downstreamnt atgtcctgcttcgagagcgagaagagcagcctggagaatgatgaagcgtgttgtggtggg gcggccgcgtcacagctgtccaactgtgcgctggccatgctggagaaagagggcagcgac tcggcgctgagccccacggagagtacacccaccagcctacagggcggcgccccactgcaa ggctacgacgtggagttcgaccctccgctggagagcaagtacgagtgccccatctgcctc atggccctgagggcggccgtgcagacgccgtgcggtcatcgcttctgccgcagctgcatc gagaagtccatccgtgatacagggcagaggtgtccagtggataacgaggtactacgggaa gaccagctgttcccagataactttgccaagcgggagatactctccctaacggtccgctgc accaacgtaggctgcactgacaaaatggagcttcgccgcctggatggccatgttacgaag tgtgagtttgccaccgtgccgtgcccgctgtgccaggacgcggtgtggaagagcaagctg gaggagcaccaaagccaacactgccagcggagacctgtgtcctgtcccgactgtgtggag agctttgtttacgaggacagcaagcttcatgagtcgctgtgtccctttgccaacgtggtt tgtcagtactgcggtatggagctcatcagagaccagttggagtctcactatgacacagag tgtccaaaggctccgatcgcctgtaccttcagcacttttggatgtcgagagatgatgcaa cgcaacgacttggcccagcacatgcaggagttcactcagatgcacatgcgctgcatggct gagtacctgcacagccacagccttaccgggtacacccagccaccttcttctgaggacaga ggggctgccgctgcggagctgggggcacgcgttggcgctagcggcggtggcgccccctgc cagtgctgcggggaactgcagaccatgcgggagaccacccagcagctggagggccgactg gtgcggcaggaccaccagctacgtgagctgagcgttcaggcaggcctggtggcggagctg cgtcgtaaggtcacctcgctggaggagaacctaaaggagctggaggccaagcagtgccaa ggcgtgtacgtgtggcccctggagggcttctcggcctacctgcgcacccaggctgccgga cagcccgttgtggtgcacagcccaggcttctacacgggccggccgggctacaagctgtgc ctgcgcctccacctccaaacgccctcggcccaacgctgctccaactacatctcgcttttt gttcacaccatgcagggtgaatttgatgggcagctgccgtggcccttccaaggcaccatc cggctggccgtactggaccaggggcctgaggcccagcaccatgtggaggtgatggagacc aagcccgacctgcaggccttccagaggcccaccatccagaggaaccccaagggctttggc tacgtcacttttctgcacttggtccagctgcagcagcgggggtttgtgcacgatgacacg ctgctggtgcgctgcgaggtgacgccgcgcttcgacagcgccctaaggcgcgagggggcg gccatgcagcccagagggcccgaggcctcgctgtga

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