Coregonus clupeaformis (lake whitefish): 121548536 Help Entry 121548536         CDS       T08357                                  Symbol thbs1b Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu04115   p53 signaling pathway cclu04145   Phagosome cclu04148   Efferocytosis cclu04350   TGF-beta signaling pathway cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cclu00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     121548536 (thbs1b)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121548536 (thbs1b)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121548536 (thbs1b)    04148 Efferocytosis     121548536 (thbs1b)   09143 Cell growth and death    04115 p53 signaling pathway     121548536 (thbs1b)   09144 Cellular community - eukaryotes    04510 Focal adhesion     121548536 (thbs1b)   09142 Cell motility    04820 Cytoskeleton in muscle cells     121548536 (thbs1b)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cclu04131]     121548536 (thbs1b)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cclu00536]     121548536 (thbs1b) Membrane trafficking [BR:cclu04131]  Endocytosis   Phagocytosis    Opsonins     121548536 (thbs1b) Glycosaminoglycan binding proteins [BR:cclu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    121548536 (thbs1b) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_CFP_C EGF_3 TSP1_ADAMTS Laminin_G_3 TSP1_CCN EGF Laminin_G_2 cEGF Motif Other DBs NCBI-GeneID:  121548536 NCBI-ProteinID:  XP_041715938 LinkDB All DBs Position 33:complement(3331582..3352311) Genome browser AA seq 1172 aa AA seqDB search MKLTGIFLLLMLWTCESARVAESRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI LNPDLIPEVPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA PIQSILTQETPAIARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDRI ILMDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK VTDENKLLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCQGEG RQTERCTMSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPNYGGKECQGNAKAT QLCNKNACPIDGCLSNPCFPGAKCTSFPDGTWRCGKCPTAYSGNGIKCKDIDECKEVPDA CFVFNGVHRCENTDPGYNCLPCPARYSGAQPFGRGVEEAAAKKQVCTPRNPCLDGSHDCN KNARCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC PNLPNSGQEDYDKDGVGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDIGDRCDNCP YNSNPDQTDTDSNGEGDACSVDIDGDSILNEKDNCPFVYNVDQRDTDLDGVGDMCDNCPL EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD DNDGIPDEKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN ALWHTGNTSGQVKTLWHDPKNVGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA NT seq 3519 nt NT seq  +upstreamnt  +downstreamnt atgaagttgacaggaatatttctgctattgatgctttggacctgcgagagcgcacgagtt gcagagagccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag aagaaccacggagtgaccctagtgaagggcgacgacccatacagccccgcctacaagatc ctcaacccggacctgatccccgaagtccccgagagctccttcagggacctcatcgattcc atccatgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg ggctccctcctgaccgtggagaagcgggacggatccggagccgtgttcgagatcgtctcg aatggaaaagcgaacaccctggatgtggttttctccaccgttaataagcaacaggtggtc tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag gaggaccgggcgcagctgtatgtcggctgtgaggaggtgaataccgcggaactggacgct cccatccagagcatcctcactcaggagactcccgccatagcgcgcctcaggatcgggaag ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc actttggacgcgattctgcgcaacaagggatgccaaaactctgttctgactgataggatc atccttatggacaaccccatcaatgggtccagccctgccattaggacggactacactggc cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg ttcaaggaactgaaggggcttggagtggtggtgaaggagctgtccaacgaactgcgcaaa gtgacggatgagaacaagctgttgatgaacagagtggggatccacagcggagtctgtctg cacaacggcatcgtccacaagaacaaggcagagtggaccgtcgacgactgcactgagtgc acttgtcagaactctgccactgtgtgccgcaagatctcctgccccctgatcccctgtgcc aacgcaaccgtgcctgatggggagtgctgcccgcgctgtggaacaccgagtgactatgca gaggacggctggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcggggc atccagcagagaggccgctcctgcgaccgtatcaacaacaactgcgagggaacctccgtc cagaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt atccgcctctgcaactcccctacaccccagctgggaggcaaggactgccagggagaggga agacagacggagaggtgcaccatgtcaccctgccccatcaacggtaactggggaccctgg tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgtctc tgcaacgaccccgcccccaactatggtggtaaggagtgccagggtaacgccaaggctact cagctgtgcaacaagaacgcctgtcccatcgatggctgtctgtccaacccctgcttccct ggggccaagtgcaccagcttccctgatggaacatggaggtgtggaaaatgccccactgca tactctggtaacggaatcaagtgcaaggacattgacgagtgtaaagaggttcctgatgct tgcttcgtgttcaacggagtgcaccgctgtgagaacaccgaccctggctacaactgcctg ccctgtcccgcacgctactctggagctcagcccttcggcaggggagtggaggaggccgcc gccaagaaacaggtgtgtacaccacgtaacccttgcctggatgggagccacgactgcaac aagaacgcccgctgtaactacctgggacactttgccgaccccatgtaccgctgtgagtgt aagcctggctatgctgggaacggacacatctgtggtgaggacacagacctggacgggtgg cccaaccaagacctggtctgcgtggagaacgccacctaccactgcaagaaggacaactgc cccaaccttcccaactcaggccaagaagactacgacaaggacggtgttggtgacgcgtgt gacaacgatgatgacaatgatggtattcctgacgacagggataactgtccgttcgtgtac aaccccaggcaatatgactatgacagagatgatattggagatcgttgtgataactgtcct tacaacagcaaccctgaccagactgacacagacagcaacggggaaggagacgcctgctct gtggacattgatggagatagcattctgaatgagaaagacaactgcccattcgtctacaac gtggaccagagagacactgatctggacggtgtgggagatatgtgtgacaactgccctctg gaacataaccctgaccaggttgactctgatgacgaccgtgtgggagataagtgtgacagc aaccaggacatcgatgaagacggccaccagaacaacctggacaactgcccctacatcccc aacgctaaccaggctgaccatgacaaagacggaaagggagatgcctgcgaccacgatgat gataatgacgggatcccagatgagaaagacaactgcagactggccttcaaccctgaccag ctcgactccgatggtgatggtcgtggagacgcttgcaaagacgactttgaccaagacaac gtgcctgacatctacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg aagttccagatggttcccctggaccccaagggaacatcccagatcgaccccaactgggtg gtcagacatcagggcaaagagctggtccagaccgtgaactgtgaccctggcattgctgtt ggttttgatgagttcaactctgtggacttcagtggtaccttcttcatcaacacggagaga gatgacgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac tcaggactgtccatcaaggtggtcaactctactaccggacctggagagcacctcaggaac gctctctggcacacgggcaacacctcaggacaggtgaagactctttggcatgatcctaag aacgttggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca ggacacatcagagtggtcatgtacgaggggaagaagatcatggccgattctgggagcata tacgacaagacgtacgcaggcggaagactaggtctcttcgtcttctcgcaagagatggta tacttctcagacctcaagtacgaatgcagagatgcataa

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