Coregonus clupeaformis (lake whitefish): 121549016
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Entry
121549016 CDS
T08357
Name
(RefSeq) dermatan-sulfate epimerase-like isoform X1
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
121549016
Enzymes [BR:
cclu01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
121549016
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Gene cluster
GFIT
Motif
Pfam:
DUF4962
CobN-Mg_chel
Motif
Other DBs
NCBI-GeneID:
121549016
NCBI-ProteinID:
XP_041716719
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Position
33:complement(30849937..30878900)
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AA seq
960 aa
AA seq
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MRTYTRGAPTVFFISLLWPLVAPVVGVAEETVDPSGGIPFMGGNYDGHPMLYFGQGEVEE
LQSAAAGTHREMAARIREAGEAMLEHPEEYLPPWSPAEFSARWNEVYGNNLGVLSMFCLL
YPHRAGALDLAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYEYLSKVQQE
RFLQVIGNATRYMYEKSYIRGWGFQYLHNHQPTNCVALLTGSLVYMTQGYLQEAYLWTKQ
VLAIMEKSMVLLQDVTDGSLYEGVAYGTYTTRSLFQYMFLVQRHFSISHFGHPWLHKHFA
FMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDRYVMRNGSGNWLAELIHQNRVLEGP
GQAGKGQRWCTLHTEFLWYDPSLTPRAPADFGTSQLHYFEDWGVVTYGSALPADTNHTFL
SFKSGKLGGRAIFDIVHRNKYKDWIKGWRNFNAGHEHPDQNSFTFAPNGVPFITEALYGP
KYTFLNNAVLFSPATSGSCFKPWDGQVTEACDSKWLKYKVGLPADAQGRVEAALERQGMV
FIRGEGQSAYNPDLKIRSFQRNMLLLHPQLLVLVDHIHLETDSPTRAMSAFFHNTDLPFK
DAKIDGVHGAFVRHGEDPYKMFWMDDTGLSEKGVLGYWNYPRGYPYNGSNYVNVTMPLRF
PHTRVAYIFFGPGVDVQSFSLRGDANRVNIYLATNEHTYTIYLLTGEVTTKPLFAMVLVD
QKKIVFEKAAGVKNSTPEEVEEYVNVVEDNLQHAKPVFQQLERHILGRVLNTASFRKTAE
RLLQFSDKKKTEEAIEKMFALNKKQGKGKGANKALGNLGDKLSESLPDIFGQIEVREKKE
RSKSTKRIIEESPEEDGDSRAFMDYGDSKKGRKGGFVKGRQFKEVHMLATANSDSLSNSS
SYIRVFLILNIATFFLLLAVLLTRFQRGRSLHTKRCFYGILLIDSFILLCLYSSCSHAQC
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgaggacctacactcgaggggcccccacagtgttcttcataagtctactgtggcctctg
gtggccccggtggtgggggtggcggaggagacggtagaccccagcggagggatacccttc
atgggagggaactacgatggacaccccatgctgtacttcggccagggcgaggtggaggag
ctgcagtcggcggcggctgggactcatcgggagatggctgcgaggatccgcgaggcgggg
gaggccatgctggagcatcctgaggagtacctgcccccctggagcccagccgagttcagc
gcccgctggaacgaggtgtatggaaacaacctgggagtgctgtctatgttctgtctgctc
tacccacacagggctggggccctcgacctggccaaggattacatggagaggatggcagct
cagcctagttggttggtaaaggatgctccctgggatgaggttcctctagcccactctctg
gtaggctttgccacagcgtatgacttcctgtatgagtacctgagcaaggtgcagcaggag
cgcttcctgcaggtgatcggcaacgctacgcgctacatgtatgagaagtcctacatccgc
ggctggggcttccagtacctgcacaaccaccagcccaccaactgtgtggctctcctcacc
ggcagcctggtctacatgacccagggttacctgcaggaggcctacctgtggaccaagcag
gtcctggccatcatggagaagtcaatggtgctgctgcaggacgtgacggacggctcgctg
tatgagggcgtggcctacgggacatacaccacccgctcccttttccagtacatgttcctg
gtgcagagacacttctccatcagccacttcggccacccctggctccacaaacactttgcc
ttcatgtacaggaccatcctgccagggttccagaggactgtagccatagcagattccaac
tacaactggttctacgggcccgagagccagctggtgttcctggatcgctatgtgatgagg
aacggcagtgggaactggctggctgagctgatccatcagaaccgggtgttggaggggccg
ggacaggccgggaagggacaaagatggtgcacactgcacacagagttcctctggtatgat
cccagcctgactcccagggctcctgcagattttggtacatcccaactccactactttgag
gactggggggtcgtcacgtatggaagtgctctacccgcagacaccaaccacaccttcctc
tcctttaagtcggggaagctgggtggacgggccatatttgacatcgttcacaggaacaag
tacaaagactggatcaaagggtggcggaactttaacgctggccacgagcaccctgaccag
aacagctttacgttcgcccctaacggtgttccttttatcacagaggctctgtacgggccc
aagtacaccttcctcaacaacgcagtgctgttctccccggctacctcaggaagctgcttc
aagccatgggacggccaggtcacagaggcctgcgactccaagtggctgaagtacaaggtg
gggctgccggcagacgcccagggcagggtggaggcggctctggagaggcagggcatggtg
ttcatccgtggggagggccagtcggcctacaaccctgacctgaagatcaggagcttccag
aggaacatgctgctcctgcacccccagctgctggtcctagtggatcatatccatctggag
acagacagcccaaccagggccatgagcgccttcttccacaacacagacctgccctttaag
gacgccaaaatagacggtgtgcacggagcctttgtcagacatggggaagacccatataaa
atgttttggatggatgacacaggcttaagtgagaaaggggtcttggggtactggaactat
ccccgtgggtacccctataacggctctaactatgtgaatgtgacaatgccactgaggttt
ccccataccagggtggcctacatcttctttgggccaggggtggacgtgcagagctttagt
ctgcgtggcgatgctaatagggtgaacatttacttggccaccaacgagcacacctacacc
atctacctgctgactggggaggtgaccaccaagcctctgttcgccatggtgctggtggac
cagaagaaaatagtatttgagaaagcagcaggagtgaagaacagcacaccggaggaggta
gaggagtatgtcaatgtagtagaggacaacctccagcacgcaaagcctgttttccagcag
ctggagagacacatcctgggccgggtgctcaacacggccagcttccgcaagacggccgag
cgtctcctccagttctctgacaagaagaagacggaggaggccattgagaaaatgtttgct
ctgaataagaaacagggcaagggcaagggggccaataaagccttggggaaccttggggac
aagctctcagagagcctgccggacatctttggacagatcgaggtaagggagaagaaggag
agatcaaagagcacaaagaggattattgaggagagccccgaggaagatggagactccagg
gcctttatggattatggagactccaaaaaaggcaggaaaggcggctttgtgaagggtcgc
cagttcaaggaggtccacatgttggcaacagccaacagtgacagtctgtcgaactcatcc
tcttatattagagtattcctcatattaaacatagccaccttcttcttgctactggctgtg
ttattgacacgcttccagagaggcagaagtctgcacaccaagaggtgtttctatggcatt
ctcctcatcgacagcttcatcttactctgcctctactcctcctgctctcatgcacagtgt
tga
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