Coregonus clupeaformis (lake whitefish): 121549844
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Entry
121549844 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: vascular endothelial growth factor receptor 1-like
KO
K05096
FMS-like tyrosine kinase 1 [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121549844
04020 Calcium signaling pathway
121549844
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121549844
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121549844
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121549844
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
VEGFR family [OT]
121549844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
VEGFR-1-like_Ig-like
Ig_2
ig
PK_Tyr_Ser-Thr
VEGFR1-3_N_Ig-like
Ig_VEGFR-1-like_5th
V-set
Pkinase
Ig_4
C1-set
CaiF_GrlA
Motif
Other DBs
NCBI-GeneID:
121549844
NCBI-ProteinID:
XP_045066386
LinkDB
All DBs
Position
34:complement(13706555..13748573)
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AA seq
927 aa
AA seq
DB search
MICFIFVVLCGLSGSALAKGKVEREPKGKFSVPVLDVKSRHLVLEANQTLTIHCRGRWEL
SWVFPGGVARDKESVQLEDSRCGRQSQHYCSQLILSSAQAQHTGSFRCRYSHRTRRQSAV
YVYVTDRQQPFVEKQNDSPDVVYMKESQPLVFPCRVTNPDATVSLVKFPDRELTPDQRNI
VWNSRQGFLIRSPTYFYIGLFSCKTTVNGTTHSLSYLTHRQVNKIMDVYLNSTSPVQALQ
GESLAINCTVTAEWNSRVSISWDYPGQANRAAIISRRIMASKTHMVFYSILSIPQLHRSD
RGLYICRVTSGPVSRETNVSVTVYDRPFIRLTPRQGAVVEAHAGQKSYRLSPKLRAFPAP
VIIWLKDGKVAAEQCSRYHVDENSLVIRDVAEEDAGKYTILVGIQEHGLYQNLTLSLVVN
VSPGIEEKAVSLQDPGSVPRGSRQALHCTSHGVPPPHIAWLWHPCTPKGLCVRPPSSSLW
SPQHVHTQPHHTHRQEVLQGKNKTVGILMVAEAFVSGVYHWIASNSVGKDELDMPFYITG
TVQRHRTNILEEPSEGGDLHLTCIANKHLYTKLSWQLVTDTAKATPPNPSLGGELSSGEF
SDTLCLLLSNLTAGDSGTYYCFAHHLLKGQNTHLDTQVDIAVLKTPVLLQNXVSSSVTLS
CPAHGVPHPLITWYKDQHPLLHGSGIVIAPGGGTLHIDRITVEEQGLYNCQSTNERGSAV
GSAYIWVHKGLSLEIPTLTCTCLLLTLFIHKLKQAEYLSIILDQEEGPLEEQCDRLQYDP
GQWEFPRDRLKLEKPLGREAFGKVMQVSAFGIDNSTGCRTVAVKMLNEGATPSEHKALMT
ELTILNHISHHLNVVNLLGACIKAGPLMVIVECCRHGNLPTYLKSKRDMFLLNSVSPSLL
CSWRISSPTGSRWLEAWSSSTHRETMA
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgatttgctttatcttcgtggtcctatgtggattgtctggcagtgcactcgcaaaaggt
aaagtggagagggagcctaaggggaagttcagtgttccagttctggatgtgaagagtcga
cacctagtcctggaggccaaccaaacgctgacgatccactgcaggggtcggtgggagctg
tcgtgggtattccctggaggtgtggccagagataaggagagtgtgcaattggaggattct
cgctgtgggaggcagagccagcattactgcagccaactgattcttagctccgcccaggcc
cagcacacaggatcgttccggtgtcggtacagccatcggacccgcaggcagagcgctgtc
tacgtctatgtcacagacagacagcagccatttgtggagaagcaaaatgacagtccagat
gtggtgtatatgaaggagagccagccactggtgttcccctgtagggtcaccaaccctgac
gccaccgtctcattggtcaagttccctgaccgtgagttgaccccagaccagaggaacata
gtgtggaacagcagacagggcttcctcatccgcagtcccacctacttctacatcggcctg
ttctcctgcaagaccactgtcaacgggaccacacactccctcagttacctcacacacaga
caagtgaataagatcatggatgtgtatctgaacagtaccagtccagtccaggctttacag
ggggagagtctggccatcaactgtactgtcactgcagagtggaacagcagagtgtccatc
agctgggactaccccgggcaggcaaacagggcagccataattagtaggcggatcatggcc
agtaaaactcacatggtattctacagtattctgtccatccctcaactccaccgctctgac
agagggctctatatctgccgagtgaccagtggtccggtcagccgagagactaacgtatct
gtcacagtctacgaccgtccgtttatccgtctgacgcccagacaaggggctgtagtggag
gctcatgcaggacagaagtcctaccgactctcgcccaaactacgggccttccctgcccca
gtgatcatctggttgaaggatgggaaggtagcagcagagcagtgttcccgttaccatgtg
gatgagaattccctagtgatccgggatgtggcggaggaggatgcagggaagtacactatc
ctggtgggaatccaggagcacggactctaccaaaacctaacgctctctctggtggtcaac
gtgagtcctgggatagaggagaaggcagtgtcattgcaggacccaggtagtgtcccgcgg
ggcagcagacaagccctgcactgcacctcccacggagtcccccctcctcacatcgcctgg
ctctggcacccctgcacccccaaaggcctgtgcgtgcgtcctccatcctcctcactgtgg
agcccccagcacgtccacacacaaccacatcatacacacagacaggaagtgctccagggg
aagaataagactgtggggattttgatggttgctgaggcatttgtgtccggagtgtatcac
tggattgcctctaactctgtgggcaaggatgaactggacatgcccttttatattacaggt
acagtacaacgacatcgcaccaacatactggaggagccaagtgagggaggagacctacac
ctcacttgcatagccaataagcacctgtacaccaagttgtcatggcaactggtgactgac
acagcaaaggccacacccccgaacccctccctgggtggtgaactgtcttcaggagagttc
tctgacactctgtgtctgttgcttagcaacctgacggcgggggattctggaacctactac
tgcttcgcacatcacctgctgaagggacagaacacacacctggacacacaggtggacatt
gcagtactgaagactccagtgctgttacagaatnctgtcagcagctcagtgacactcagc
tgccccgcccacggcgtgccacaccccctcatcacatggtacaaggaccaacaccctcta
ctgcatggctcaggtatcgtcatagcaccaggaggtgggaccctccacattgaccgaatc
acagtggaggaacagggtctgtacaactgccagtctaccaatgagagaggctctgctgtg
ggctccgcctacatctgggttcacaagggcctgtctctggagatccctactctcacctgt
acctgtctgctgctcactctcttcatacataaactcaaacaggcagagtacctgtcaatc
atcctggaccaggaggaggggcctctggaggagcagtgtgatagactacagtatgacccc
ggccaatgggagttccccagagaccgcctcaaactggagaaacctctgggccgtgaggcc
tttggaaaggtcatgcaggtgtccgcctttggcatcgacaactctacaggctgcaggact
gtggctgtcaagatgctcaacgagggggctactcccagtgagcacaaggctctgatgaca
gaactgacaatcctgaaccacatcagtcaccacctgaatgtggtcaacctgctgggagcc
tgcatcaaggcagggcctctgatggtcatagtggagtgctgtaggcacggaaacctcccc
acctacctgaagagcaagagagacatgttcctgctcaacagtgtgtctccaagtctcctc
tgctcctggaggatctcatctcctacaggttccaggtggctcgaggcatggagttcctct
actcatagagagactatggcttga
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