Coregonus clupeaformis (lake whitefish): 121550179
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Entry
121550179 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM37
KO
K10608
tripartite motif-containing protein 37 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121550179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121550179
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121550179
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121550179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MATH_2
zf-B_box
MATH
zf-C3HC4_3
HTH_1
HlyD_2
zf-C3HC4_2
LAMB1
PIN_8
Motif
Other DBs
NCBI-GeneID:
121550179
NCBI-ProteinID:
XP_041718236
LinkDB
All DBs
Position
35:5558778..5582219
Genome browser
AA seq
971 aa
AA seq
DB search
MRLRYWIEISHNFLHLKKTKLAEMDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCF
SCIRRWLTEQRAQCPHCRAPLQLRELVNCRWVEEVTQQLDTLQLCNLSKHEENDKDKCEN
HHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMEL
ISLVQEVERNVEAVRGAKDERVREIRNAVEMMIARLDNQLKNKLLTLMGQKTSLTQETEL
LESLLQEVEHQLRSCSKSELISKSPEILLMFQQVHRKPMQSFVTTPVPPDFTSELVPAYD
SSTFVLANFSTLRQRADPVYSPPLQISGLCWRLKVYPDGNGVVRGNYLSVFLELSAGLPE
TSKYEYRVEMVHQASSDPTKNIIREFASDFEVGECWGYNRFFRLDLLASEGYLNMQTDTL
VLRYQVRSPTFFQKCRDQYWYISQLESAQSSYIQQINNLKERLAIELFRRQQSRSSSPPN
RRLGPSTSERDSRSGKCPVAEDGCQTTETKGEEKTQHDSNELSDGDLEVDCLTGDEEVNP
LDGSSTSGSSTATSNTEENDIDEETMSGENDVEFSGNLEMEEGELPDDVAGAAGSSNPGA
RCLRRSGLPSAGDLLEIDPVILIQLLDLKERSSVESLWGLQPRPPASLLHSQVQVHSRKE
RGERRPQTVRRGAPDSGVLIRLKAQMAEVRSKMSDVKCQLEPRGETKAGPSGGATGVEQG
PSHHSDLGPSRKPTELDLIRKGPGASRHCRSGGKKASSHKQEGSGLGLRRATDLVEKELR
GQSDGELSSDQGLFPRDTSNGSEGALKPRSAHSSPPYLGNSSSCSENKPCSSKHDQEQLC
VADLYALGCLSGISTATMTRPRTQPMGAGLLTDSSLDCDSEETAEIRQSLLSLAEEPSLC
PNEGHVVQKRTVVLLPGMSSDSEIDCDTENEDEVVALEAGDCRYDAQALPCAGDQLISDD
LSFTTGETTER
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgagattaaggtattggattgagatttcacacaatttcctccacttgaagaaaactaaa
ctggctgagatggatgaacaaagtgttgagagtattgcggaggtgtttcgttgtttcatc
tgtatggagaagctgcgggacgctcggctctgcccccactgctccaaactctgctgtttc
agctgcatacggcgctggttgactgagcagagagcccaatgcccacactgtcgggcgcca
ctgcaactgcgggagctggtgaactgccgctgggttgaggaagttacccagcagctggac
accctgcagctctgcaacctctccaaacacgaggagaacgacaaggacaagtgtgagaac
caccatgagaagctcagtgtgttctgctggacctgtaagaagtgcatctgccaccagtgt
gctctgtggggaggcatgcatggcggccacaccttcaagcctctagctgagatctatgag
cagcacgtgaccaaggtgaacgaggaggtggccaagctccgccgccgcctcatggaactc
atcagcctggtgcaggaagtggagaggaatgtggaagcagtgcgaggggccaaggacgag
cgagtgcgagagatccgtaatgcagtagagatgatgatcgcccgtctggacaaccagctc
aagaacaaactcctcaccctcatgggtcagaagacctccctcacccaagagactgagcta
ctggagtctctcctgcaagaggtggaacatcagctgcggtcctgcagtaagagcgagttg
atctccaagagcccagagatcctgctcatgttccagcaggttcaccgcaagcccatgcag
tcgtttgttaccaccccagtccccccagacttcaccagtgagctggttcctgcctatgac
tcaagcactttcgttctggcaaacttcagcaccctgagacagagggcagatcctgtctac
agcccaccactccagatatctggcctctgctggagactcaaggtttacccagatggcaac
ggtgtggtgcgcggcaactacctgtcagttttcttggaactatctgcaggactccctgaa
acgtcgaagtacgagtaccgcgtggagatggtccaccaggcctccagcgaccccactaag
aacattatcagggagtttgcatcagactttgaggtgggggagtgctggggatacaaccgc
ttcttcagactggacctgctggccagcgagggctacctcaacatgcagactgacacacta
gtcctcaggtaccaggtgcgttcgcccaccttcttccagaagtgcagagaccaatactgg
tacatcagccagctggagtcagcccagtccagctacatccagcagatcaacaacctcaaa
gagaggctggccattgagctgttccgtaggcaacagtctcgcagctcgtcccctcctaac
cgacgcctgggcccctcgacctcggagagagactcccgctcagggaagtgccccgtggct
gaggatggctgccagaccaccgagaccaaaggcgaagagaagactcagcacgactccaat
gagctgtctgacggggacttggaggtggactgtctgacgggggatgaggaggtgaaccct
ctggacggcagcagcacctcaggcagctccacggcaaccagtaacacagaggagaacgac
atcgacgaggagaccatgtctggggagaatgacgtggagttcagtgggaacctggagatg
gaggagggagaactgcctgacgatgtggcaggagcagcaggaagctctaaccccggggcc
aggtgtctgaggcgtagtggtctcccctcggctggagatctgctggagattgaccccgtc
atcctcatccagctactggacctgaaggagcgcagcagtgtggagtcactgtggggcctt
cagcccagaccccctgcctccctgctgcacagccaagtccaagtccactccaggaaggag
cggggtgagcgcaggcctcagacagtgcggcggggagccccagactcgggggtcctgatt
cggctcaaggcacagatggccgaggtgcgcagtaagatgtcggatgtcaagtgtcagctg
gaaccacggggggagaccaaggcagggccctccggcggggccacaggggtggagcagggg
ccatctcaccactcagacctagggcccagcaggaagcccacagagctagatctgataagg
aaaggacctggggcctccagacactgtcgctctggagggaagaaggcctcatctcacaag
caggaggggagtgggctgggcctgaggagggccaccgacctagttgagaaggagctgaga
ggccagagcgatggagagttgtccagcgaccaaggcctctttcccagggacacctccaat
ggatcagagggagccctgaagccacgcagcgcccacagctcccctccctatctgggcaac
tcgtcgtcctgctccgaaaacaaaccctgcagctccaaacacgaccaggagcagctctgc
gtggccgacttgtacgctctggggtgcctcagcggcatctcgaccgccacgatgacacga
cccaggacccagcccatgggggccggcctgctgacggacagctctctggactgtgactcg
gaggagacggctgagatccgccagtcactgctctccctggcagaggaaccctctttatgc
cccaacgaaggtcatgttgtccagaagcggacagtggtactgctgccaggtatgagcagt
gacagtgagatcgactgtgacacggagaacgaggacgaggtggtggccctggaggctgga
gattgtcgctatgacgcccaggcactgccctgcgcaggggaccagttgatctctgatgac
ctaagcttcaccacaggagagaccaccgagaggtga
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