KEGG   Coregonus clupeaformis (lake whitefish): 121550397
Entry
121550397         CDS       T08357                                 
Name
(RefSeq) lysine-specific demethylase 2B
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    121550397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cclu03000]
    121550397
   04121 Ubiquitin system [BR:cclu04121]
    121550397
   03036 Chromosome and associated proteins [BR:cclu03036]
    121550397
Enzymes [BR:cclu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     121550397
Transcription factors [BR:cclu03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    121550397
Ubiquitin system [BR:cclu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     121550397
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    121550397
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     121550397
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box PHD Viral_cys_rich
Other DBs
NCBI-GeneID: 121550397
NCBI-ProteinID: XP_041718568
LinkDB
Position
18:complement(55858054..55886452)
AA seq 782 aa
MALSLSADEEDYDSESEQQHAANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLEEEEDK
FNIMLMECSICSEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGF
KYASNLPGSLLREQKAVKEEGESTSTSTAKSKPERDETPRHRPEEWEPLHRQPPVLSPST
LPRPRPEDKLRKKRKLFDDDYEEDFGVRKKGKSDEPLFPKLLHQIKMEEEDEVDEEEKAS
LYRRGLERRGRLGDTEEEAEDRDDEDTKTNLSRPPLKTPVLDSDQSHCSSPWAGPSSEGG
SEPQEKGPRPKACRKRRLPNKELSKELSKALNQEIQKTEDCLANENRQPLKVEPESENEE
PKRGFRNSSDQGGERPHLWTKEMNGTPWELRHFYPSQITPLGFNRSSPGTRPLPPHSPPK
CVQMERHVIRPPPISPPPDRLPLVDGKTHTVQREVWMKIFGHVTHKELCICMRVCKTWNR
WCCDKRLWTIIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVL
LLSGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRN
VVDLRLAGLDITDASLRLIIRHMPVLSQLDLSYCNHVNDQSVNLLTAAGTTTRDSLTEIN
LSVCNRVTDHSLTFFKRCGSICHIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQK
LG
NT seq 2349 nt   +upstreamnt  +downstreamnt
atggccttgtcactgagtgcagacgaagaggattatgattcagaatctgaacagcaacat
gcagccaaccggccaaagcccaagatggggacgtcagcagcggtcaagctgccgtccaat
cgcagtgcgtctggtgccagacgcaggagaacacgctgccgaaagtgtgaggcatgcctc
cgaaccgaatgtggagaatgtcacttctgtaaagacatgaagaagtttggaggaccaggg
cgcatgaaacagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacggct
gtgtgtgttgtgtgtggagaggcaggtaaggaggacacactggaggaagaggaggacaag
ttcaacatcatgctcatggagtgctccatctgcagtgagattgttcaccccaactgctta
aaggtaaaagatgcctctggcgtggtgaatgatgaacttcctaactgttgggaatgtccc
aaatgcaactacgctgggaaaacaggaaaagtctgcaagcaaaaaaggggaccagggttc
aagtatgcgtccaacctccctggctctctgctgagggagcaaaaggcggtcaaggaggag
ggcgagtccacctctacgtctacagccaagagcaagcctgagagggatgagactcccaga
cacagacctgaggaatgggagccccttcacagacaaccccctgtcctatcccccagcacc
ctgcctcggcccagacctgaggacaaactgaggaagaagagaaagctcttcgatgatgac
tatgaagaggactttggtgtgaggaagaagggaaagtcagatgaacctctgttccccaaa
ctccttcatcagatcaagatggaggaggaggatgaggtggatgaggaggagaaggcctct
ctgtaccggcgaggcctggagaggagagggcgtttaggagataccgaggaggaggcagag
gacagggatgacgaggacacaaagacaaacctgtccaggcctcctctcaaaactcctgtt
ctagacagtgatcagtctcactgcagctctccatgggccggccccagcagtgaggggggc
agtgaaccccaggagaaaggcccacgtcccaaagcgtgccgcaaacgccgattacccaac
aaggagctgagcaaagagctgagcaaagcactgaaccaggagatccagaagactgaggac
tgcctagccaatgagaaccgccagcccctgaaggtggagccagagagtgagaatgaggag
ccaaagaggggcttccgcaacagcagtgaccaaggaggggagcgcccccacctctggacc
aaggaaatgaatggcaccccctgggagctgcgccacttctaccccagccagatcacccct
ctgggcttcaacaggagctcccctggcacccggcccctgcccccacactccccacccaag
tgtgtccaaatggagcgccacgtcatccggccgccacccatcagccccccaccagacaga
ctgcccttggtggatgggaaaacccacacggtgcagcgagaggtctggatgaagatcttc
ggacacgtcacacacaaggagctgtgtatctgcatgcgtgtctgcaagacatggaacaga
tggtgctgtgataagagactgtggaccataatcgatctgaaccgctgtaaatctatcact
cccctgatgctgagtggcatcatccgcagacagcccctctcactggacctcagctggacc
aacatctccaagaagcaactaagctggcttataaaccgcttaccaggtctgcgggtgttg
ctgctctcaggttgctcgtgggtggctgtatctgccctctgcacctctagctgccctctg
ctgcgaaccctcgatgtgcagtgggtggaggggctcaaagatgcccagatgagggacctg
ctctcgcctccgaccgacaacagaccaggtcagttggacaaccgttgtaagctgaggaac
gttgtggacttacgtctggccggactggacatcacagacgcctctctgcgtctgattatc
agacatatgccggtactttcccaactggacctgagctactgcaaccacgtcaatgaccag
tcggtcaacctgctgacggccgcagggacgacaaccagagactccctcacagagatcaac
ctgtcagtttgtaatagggtgacagaccattcccttaccttcttcaagcgctgtggaagc
atctgtcacattgacctgcgctactgcaaacaggtgaccaagacggcctgtgaacagttc
atagcagagatgtctgtaagtgtacagtttggcctcaaagaggacaaattactgcagaaa
ctcggctag

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