Coregonus clupeaformis (lake whitefish): 121550784
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Entry
121550784 CDS
T08357
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4-like
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121550784
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121550784
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
121550784
NCBI-ProteinID:
XP_045077312
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Position
7:complement(34934340..35021346)
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AA seq
1263 aa
AA seq
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MKDTDKENEGGGRRTGTAKSEKDQSWIPKIIKKRVCTTFIEDSFSNGVLCQCGGVRETHC
SIATGDYFGAAIVTQWDSSQHSSEYPTDAFGELEFAGAGRRHSHFLRLSCDTPPHIMYSL
MTAHWGVPSPNLVVSVVGGGRGHEKVKTWVREVLRQGLVRAAQSTGAWIVTGGLREGVGR
CVGEAVRDHAAAASSLSQKKVIAVGVAPWGLVHNRQWLVNAEGSFPARYYVQNTSSDSCC
LDSNYQAFLLVDDGSVGRRGGETAFRAKMEDYISHQRTGIWGSGSIDVPVLCMLISGEAA
MLERMDLSLKKATPWLVLNGSGPAADLICELLDALSAVPMSPHSPPPEGEGSEKASVELR
DRARERVRRYFPAKADLEKLVDRALSIYKNRDLITVFHGEQESPDDFDTVLLKALVRASK
RVSSDASEYTEELKLAVAWNRVDIAKSELFNGDIQWRYEDLEDSMTDALINDKPQFIRLF
NENGLNILDYLTYRHLEVLYRSLSDSSLAYTLLQRLLTERQGLAGYLPTAACSPKEALAL
KSPQSPLSGPSSAKELSLYEVSQLLWDILGDVCEPFYYSLLGLDQSTSTRRAMKQVNKLL
LGDCSYREQSCLNPWASLFIWAVLQNRSEMAVYFWEMGGESVHSALAGCKILRELSKLES
ETETKLSMKELAQKFENLALDVFSECYQSSESRSFTLLIRQSPVWGKATCLQMATSADAR
HFFSHDGVQSLLSQIWWGDMKRSTKVWKLVLTFFLPPLIYTNLISFREHEEEGKSEEVPH
GRDTESLDGGDATMFSLSDVMQTEEDVEEYAALRANLKSAPSSNPKRPFVLLRWREFWFA
PVTSFLGNVLMYFLFLGLFAYILLLDFKPPPPHGPSTLEFVLYFWVFTMVCEEFRQTFFS
GSTTLYQRMKLYIEDMWNKCDITAISLFALGMCCRMFPWSYEFGRAVLAVDYMVFTLRLI
HIFAIHKQLGPKIIIVEKMMKDIFFFLFFLAVWLLAYGVANQALLYSYDPRPGWIFRRVF
YRPYLHIFGQIPIHEMDADKLEEGRECTNNATLVKAGAEPCMSTDHNWLVVILLVIFLLV
TNILLVNLLIAMFSHTFSKVQEHSDTYWKFQRYNLIVEYHSRPCLAPPFILISHLHLIIK
RHIRKIPSTKIKHFVLEIHGREASRLNTWEAIQKENILFAQNKREREKDSERLKRTSVKV
DSVLKQMAEIRDHDRRLRMLETELEYCTSALSWMTEALSQSNLIKTTRPPPALRDLTPIS
PTI
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatacggataaagagaatgaaggaggcggaaggagaacgggaacagcaaaatcc
gagaaagatcagagctggatccccaagatcatcaaaaagagagtttgcaccacgttcata
gaggactcctttagcaatggtgtgttgtgtcagtgtgggggtgtgcgggagacacactgc
tccatcgctacaggagactatttcggggcggccatcgtcacccagtgggacagctctcag
cactcctcagagtaccccaccgacgccttcggagagttggagttcgcaggggccggcagg
agacacagccatttcctgcgtctgtcatgcgacaccccacctcatatcatgtacagcctg
atgacggcccattggggggtgccctcccccaacctggtggtttctgtggtgggggggggg
aggggtcacgagaaggtcaagacctgggtcagggaggtgctgagacaggggctggtcagg
gcggcacagagcacaggggcgtggatagtgacgggggggctgagggagggggtgggtcgt
tgtgttggggaggcagtgagggatcatgcggcggcggcctcctccctgtcccagaagaaa
gtcatcgctgtgggcgtggccccctggggcctcgtgcacaacagacagtggctcgtcaac
gctgagggtagttttccagcacggtattatgtccagaacacatccagtgattcgtgctgc
ctggatagtaactaccaggccttcctgctggtagatgatgggagtgtaggccggcgggga
ggggaaacagccttccgggctaagatggaggactacatctcccaccagcgcaccggcatc
tggggtagtggcagtatagatgtccctgtattgtgtatgctcatctcaggggaagctgcc
atgctggagaggatggatctctctctgaagaaggctactccctggctggtgttgaatggt
tctggtccagcggcggaccttatctgtgagctgctggatgccctgtcagccgtgcccatg
agcccccactctccccctccagagggtgaggggagcgagaaggccagcgtggagctgcgc
gacagagcccgtgagagggtccggagatacttccctgccaaggcagacctggagaagctt
gtggacagggctctgagtatctataaaaacagagatctgatcacagtgttccacggggag
caggagagtcctgatgattttgatacagtgctactgaaggctcttgtcagagctagtaaa
cgtgtgtcaagcgatgccagtgagtacacagaggagctgaagctagcagtagcctggaac
agggtggacatcgctaagagtgaactcttcaacggagacatccaatggaggtacgaggac
ctggaggactccatgacggatgcgctgatcaacgacaagccccagttcatacgtctcttc
aacgagaacggcctcaacatcctggactacctaacttacaggcatctggaggtcctgtac
cgctcgctgtccgacagttctctggcctacacgctgctccagcggcttctcacagagagg
cagggcctggccggatacctgcctaccgctgcctgctctccgaaagaggccttagccctc
aagagcccccagagccccctatcaggaccctcctctgccaaagagctcagcttgtatgag
gtgtcacagcttctatgggacatcctgggagatgtgtgtgagcccttctactacagtctt
ctgggtttggaccagagcaccagcaccaggagagcaatgaagcaagtgaataagttgttg
ctgggggattgttcgtacagggagcagagctgtctcaacccgtgggcctctctgttcatc
tgggctgtgctgcagaaccgcagcgagatggccgtctacttctgggagatgggaggggag
tctgtccacagtgctctggcaggctgtaagattctgagggagctgtctaagctggagagt
gagacggagaccaaactctctatgaaggagctggcccagaagtttgagaacttggccctt
gacgtgttcagtgagtgctaccagagcagtgagagccgctctttcaccctccttataagg
cagtctccagtgtggggcaaagctacttgtctgcagatggccacctcagccgacgcccgc
cacttcttcagccacgatggtgtgcagtctctgctgtctcagatctggtggggagatatg
aagaggagcacgaaggtctggaaattggtcctcaccttcttcttaccccccctcatctac
accaacctcatcagcttcagggaacatgaggaagaggggaagtcagaggaggtgcctcat
ggtcgagacacagagagtctggacggaggagatgccactatgttctccctctccgacgtc
atgcaaacggaagaggatgtcgaggaatatgctgctctaagggccaatctgaaaagtgcc
ccctcctccaatcccaagaggcccttcgtactgctgcgctggagggagttctggtttgcg
cccgtcacctcgttcctaggcaacgtgctgatgtacttcctgttcctcggcctgtttgct
tatatcctattgttggacttcaagccaccgcccccacacggcccgtccaccttagagttt
gtcctctacttctgggtcttcaccatggtctgtgaggagtttcgacagacattcttcagt
ggcagcaccactttatatcagagaatgaagctctacatcgaggacatgtggaataaatgt
gacatcacggccatctcactctttgcgctgggaatgtgctgcagaatgttcccgtggtcc
tatgagtttggccgtgctgtgttggctgtggactacatggtgtttaccctccgtctcatc
cacatcttcgccatccacaaacagctgggacccaagatcatcattgttgagaaaatgatg
aaagacatcttcttcttcctgttcttcctggcggtgtggctcctggcctacggcgtagcc
aatcaggcgctgctctactcctacgacccccgtcccggttggatatttcgcagagtgttc
tacaggccatacctccacatatttggacagatccccatacacgaaatggatgctgataaa
ctggaggaggggagagagtgcaccaataacgccaccctggtcaaggcgggggcagagccc
tgcatgagtaccgaccacaattggctggtggtcatcttattggtcatcttcctgctggtc
accaacatcctcctggtcaacctgctcattgccatgttcagtcacacgttctccaaagtg
caggaacacagcgacacctactggaagttccagcgctacaacctgatcgtggagtaccac
tccagaccctgtctggcaccacccttcatcctcatctcccacctccacctcatcatcaag
agacacatccgcaagatcccctccacgaagatcaaacactttgttctggagatccatggt
agggaggccagtagactgaacacgtgggaggccatccagaaggagaatatactgtttgcc
cagaacaaacgagagagagagaaagactcagagagactcaaacgtacctccgtcaaagtg
gacagtgtattaaagcagatggcagagatccgggaccacgaccgcaggctgagaatgctg
gagacagagttggagtactgtactagtgccctctcctggatgacggaagctctctctcag
agtaacttgataaagaccacacgtcctccgcccgctctcagagatctgaccccaatctct
ccaactatctga
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