Coregonus clupeaformis (lake whitefish): 121552471
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Entry
121552471 CDS
T08357
Name
(RefSeq) dermatan-sulfate epimerase-like isoform X1
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
cclu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
121552471
Enzymes [BR:
cclu01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
121552471
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Gene cluster
GFIT
Motif
Pfam:
DUF4962
CobN-Mg_chel
Motif
Other DBs
NCBI-GeneID:
121552471
NCBI-ProteinID:
XP_041721343
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Position
36:complement(38054893..38086401)
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AA seq
975 aa
AA seq
DB search
MRTYTRGAPTVFFISLLWPLVSPVVGVGEETDPSGGIPFMGGNYDGHPMLFFGQGEVEEL
QAAAAGTHREMAARIREAGEAMLEHPEEYLPPWSPAEFSARWNEVYGNNLGVLSMFCLLY
PHRAGALDLAKDYMERMAAQPSWLVKDAPWDEVPLAHSLVGFATAYDFLYEYLSKVQQER
FLQVIGNATRFMYEKSYIRGWGFQYLHNHQPTNCVALLTGSLVYMAQGPPYYTMRMRKIF
AVWGYLQEAYLWTKQVLAIMEKSMVLLQDVTDGSLYEGVAYGTYTTRSLFQYMFLVQRHF
SISHFNHPWLHKHFAFMYRTILPGFQRTVAIADSNYNWFYGPESQLVFLDRYVMRNGSGN
WLAELIRQNRVLEGPGQAGKGQRWCTLHTEFIWYDPSLTPRAPADFGTSQLHYFEDWGVV
TYGSALPADTNHTFLSFKSGKLGGQAIFDIVHRNKYKDWIKGWRNFNAGHEHPDQNTFTF
APNGVPFITEALYGPKYTFLNNAVLFSPAASGSCFKPWDGQVTEACDSKWLKYKVGLAAD
AQGRVEATLERQGMVFIRGEGQSAYNPDLKIRSFQRNLLLLHPQLLVLVDHIHLETDSPT
RAMSAFFHNTDLPFQEAKIDGVHGAFVRHGEDPYKMFWLDDTGFSEKGVLGYWNYPRGYP
YNGSNYVNVTMPLRYPHTRVAYIFFGPGVDVQSFSLRGDANRVDIYLTTNEHTYTIYLLT
GEVTNKPLFAMVLVDQKKIVFEKAAGVQNDTPEEVEEYVNVVEDNLQHAKPVFQQLERHI
LGRVLNTASFRKTAERLLQFSDKKKTEEAIKKMFALTKKQGKGKGTKKALGNLGDQLSES
LPDIFAQIEVSEKKERSKSTKRIIEESPEEDGDSRAFMDYGDSKKGRKGGFVKGRKFKEV
HMSATAKSDSLSNSASYIRLFLILNIATFFLLLAVLLTRFQRGRSLHTQRCFYGILLIDS
FILLCLYSSCSRAQC
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgaggacctacacccgaggggcccccacagtgttcttcataagtctactgtggcccctg
gtgtccccggtggtgggggtgggggaggagacggaccccagtggagggatacccttcatg
ggagggaactacgatggacaccccatgctgtttttcggccagggcgaggtggaggagctg
caggcggcagcggctgggactcaccgggagatggctgcgaggatccgcgaggcgggggag
gccatgctggagcaccctgaggagtacctgcccccctggagcccggccgagttcagcgcc
cgctggaatgaggtgtatggaaacaacctgggcgtgttgtctatgttctgtctgctttac
ccacacagggccggggccctcgacctggccaaggattacatggagaggatggcagctcag
cctagttggttggttaaagatgctccctgggatgaggttcctctagcccactctctggtt
ggcttcgccacggcgtatgacttcctgtatgagtacctgagcaaggtgcagcaggagcgc
ttcctgcaggtgatcggcaacgctacgcgcttcatgtatgagaagtcctacatccgcggc
tggggcttccagtacctgcacaaccaccagcccaccaactgtgtggctctcctcactggc
agcctggtctacatggcccaggggcccccatactacacaatgaggatgaggaagatattt
gctgtttggggttatctgcaggaggcctacctgtggactaagcaggttctggccatcatg
gagaagtctatggtactcctccaagacgtgacggacggctcgctgtacgagggcgtggcc
tacgggacctacaccacccgctctctattccagtacatgttcctggtgcagagacacttc
tccatcagccacttcaaccacccctggctccacaaacactttgccttcatgtacaggacc
atccttccagggttccagaggactgtagccatagcagattccaactacaattggttctac
gggcctgagagccagctggtgttcctggacagatacgtgatgaggaacggcagtgggaac
tggctggctgagctgatccgtcagaaccgggtgttggaggggccgggacaggccgggaag
ggacagagatggtgcacactgcacacagagttcatctggtatgatccaagcctgactccc
agggctcctgcagacttcggtacatcccaactccactactttgaggactggggggtcgtc
acgtatggaagtgctttacccgcagacaccaaccacaccttcctctccttcaagtcgggg
aagctgggtggacaggccatatttgacatcgttcacaggaacaagtacaaagactggatc
aaagggtggcggaactttaacgctggccacgagcaccctgaccagaacacctttacgttc
gcccctaacggtgttccttttatcacagaggctctgtacgggcccaagtacaccttcctc
aacaacgcagtgctgttctccccggctgcctcagggagctgtttcaagccatgggacggt
caggtcaccgaggcctgtgactccaagtggctgaagtacaaggttgggctggcggcggac
gcccagggcagggtggaggcgactctggagaggcagggcatggtgttcatccgtggggaa
ggccagtcggcctacaaccctgacctgaagatcaggagcttccagaggaacctgctgctc
ctgcacccccagctgctggtcctagtggatcatatccatctggagacagacagcccaaca
agggccatgagcgccttcttccacaacacggacctgccctttcaggaagccaaaatagat
ggtgtgcacggagcctttgtcagacacggtgaagacccgtataaaatgttctggctggat
gacacaggcttcagtgagaaaggggtcttggggtactggaactatccacgtggttacccc
tataatggctctaactatgtgaatgtgacaatgccactgaggtacccacacaccagggtg
gcctacatcttctttgggccgggggtggacgtgcagagctttagcttgcgtggtgatgct
aatagagtggacatttacctgaccaccaacgagcacacctacaccatctaccttctgaca
ggagaggtgaccaacaagcctctgttcgccatggtactggtggaccagaagaagattgtg
tttgagaaagcagcaggagtgcagaatgacacgccagaggaggtggaggagtatgtcaac
gtagtagaggacaacctccagcatgccaagcctgttttccagcagctggagagacacatc
ctgggccgggtgctcaacacggccagcttccgcaaaacggctgagcgcctcctccagttc
tcagacaagaagaagacggaggaggccatcaagaaaatgtttgctctgactaagaaacag
ggcaagggaaaggggaccaagaaagccttggggaaccttggggatcagctctcagagagc
ctgccggacatctttgcacagatcgaggtgagtgagaagaaggagagatcgaagagcaca
aagaggattattgaggagagcccagaggaagatggagactccagggcttttatggattat
ggagactcaaagaaaggcaggaagggtggcttcgtgaagggtcgcaagttcaaggaggtc
cacatgtcggcaactgccaagagtgacagtctgtcaaactcagcctcttatatcagacta
ttcctcatcttaaacatagccaccttcttcctgctactggctgtgttattgacacgcttc
cagagaggcagaagtctacacacccaaaggtgtttctatggcattctcctcattgacagc
ttcatcttactctgcctctactcttcctgctctcgtgcacagtgttga
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