Coregonus clupeaformis (lake whitefish): 121553399
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Entry
121553399 CDS
T08357
Symbol
ret
Name
(RefSeq) proto-oncogene tyrosine-protein kinase receptor Ret isoform X1
KO
K05126
proto-oncogene tyrosine-protein kinase Ret [EC:
2.7.10.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121553399 (ret)
04020 Calcium signaling pathway
121553399 (ret)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cclu01001
]
121553399 (ret)
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
121553399 (ret)
Protein kinases [BR:
cclu01001
]
Receptor tyrosine kinases (RTK)
RET family
121553399 (ret)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
RET_CLD3
Pkinase
RET_CLD4
RET_CLD1
RET_CRD
Cadherin
Pkinase_fungal
RIO1
Haspin_kinase
Motif
Other DBs
NCBI-GeneID:
121553399
NCBI-ProteinID:
XP_041722408
LinkDB
All DBs
Position
37:complement(6545883..6582124)
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AA seq
1113 aa
AA seq
DB search
MGQTCGFSLGNIVLVLLLLCEGSVGLYFPQNQYKETVYVGQSAGTPVLQVHAMVESDSQR
PHFYLCYLRPPPYAPWFHLDETTGILSMNKTLEWSDFDSAYKFWKLPLSVIAATRPLKKF
LCGLSHPTVQVSLTFINDTAPPCGQTRPELKKLCFPDKDLHSHIKENRFPGALRQLRQLT
RLNVCPNYTISYSVESDVPAPFAVNDTTTELVVTAPLDREERETYSPILVCTVQTDTMID
KFFVTLHINVYDEDDNAPYVSGTDTEDVVLDFDRMQGSSFGNLVVYDRDTTPRYPKSQSQ
NRFVGNMMTNDSWINEMFTIEYSFKEEKAIFGNVRGTVHEFRLALKKNLSVTENRTLQLD
YLVNDTTYPGPEGTVMLHYNITILPVPIHFTNVTYLFTLTCRANVYAQVGRICVDNCLKF
QGINVTYRLAVAEKTDKNVSADIQSCHAAISIAQSLKDMAGVLYVNDTEALHRPECQDLQ
YVVIAQEQQNLLQASAQILIVLDSNIDKQGLEDQRFLSCAKGRQRRDCENIRGLGATTGR
CQWRQGSAKGISESYSTCSPDLRTCPDGFCDAVESKDVSICPQDCTTEPVIGGHEKGIVS
GIRAGHGTCYCYSEKCFCEKDDIEEAMCDEVCKTIIATAVLLSFIVSILLSSYFIHRYHK
NSPKPPITSAEMTFRRPAQSYPISYSANNMRRGSLDSMENHVAIDTFKIPEDPKWEFPRK
NLVLGKTLGEGEFGKVVKATAFRLKGKAGYTTVAVKMLKDHASHSELRDLLSEFTLLKQV
NHPHVIKMYGACSQDGPMYLIVEYAKYGSLRNFLRESRKVGPSYMLGNDANRNSSYLENP
DERALTMGDLISFTWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYE
EDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLF
NLLKTGYRMEKPENCTEEMYNLMLRCWKQESNKRPIFADISKELEKMMVKNRDYLDLAAS
TPADTLLYDDALSEEDTPLVDCNNAPLPRTIPSTWIENKLYGMSYPNWPEKSPVLLNRLD
ATNPVFTRYANDSVYANWMALPSPAKIVDKLDS
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggggcaaacgtgtggtttctctctgggaaacattgttttggtcctcctgctgttgtgt
gaagggtcagttgggctctacttcccccagaatcagtacaaggagactgtgtacgtcggg
cagtctgcagggacacccgtgctccaggtccacgccatggtggagagtgactctcaacgg
ccccacttctacctgtgctacctgaggcctccaccctatgctccgtggttccacctggac
gagaccacagggatactctccatgaataagaccctggagtggagcgactttgactctgca
tataagttttggaagctgccgctgagtgtcattgcagcgaccagaccattgaagaaattc
ctctgtggcctcagccaccccaccgtacaggtcagcctgaccttcatcaatgacacagcg
ccaccgtgtggccagaccagaccagagctgaagaaactgtgcttccctgacaaagacctg
cactcccacattaaggagaacaggttccccggggccctccgccagctcagacagctcacc
aggcttaacgtctgccccaactacaccatctcctacagtgtagaatccgatgttccagcc
ccattcgctgtgaatgacaccaccactgagttggtagtgacagctccattggaccgcgag
gagagggagacgtacagtcccattctggtttgcacagtgcagactgacacgatgatagac
aagttttttgttacactacatatcaacgtctacgacgaggacgacaatgcaccgtatgtc
agtggaacagacacagaggacgtggtactagattttgatcgcatgcagggaagttctttt
ggcaacttggttgtctatgatagagacacaacacccaggtatcccaaatcccagagtcag
aatagatttgtcggaaatatgatgaccaatgactcatggataaatgaaatgttcaccata
gaatactctttcaaagaagagaaggccatttttggcaacgtccgaggcactgttcatgag
ttccggcttgcactgaagaagaatttgtctgtaaccgagaataggacactccagctggat
tacctggttaatgacactacataccccggtccagagggaactgtgatgctgcactacaat
atcaccatcttacctgtccccatccacttcaccaatgtgacatacctcttcaccctaaca
tgtagagctaatgtctacgcccaggttggtaggatttgtgtggacaactgcctgaagttc
cagggcatcaatgtcacataccggctagcggtagcagagaagacagataagaatgtgtcc
gccgacatacagtcatgccacgctgcgattagcattgcacagagcctcaaggacatggcg
ggggtgttatatgtgaacgacacagaggcgcttcacaggccagagtgccaggacctgcag
tacgtggttattgctcaagagcaacagaatctgctgcaggctagcgctcagatcctcatt
gtgctcgatagcaatattgataagcagggcctagaggaccagcggttcctctcctgtgca
aaggggagacagcgtagggactgtgagaacatcagaggcctgggggcaaccacagggagg
tgccaatggagacagggctctgcaaaaggaatatcagaaagttattccacctgctcccct
gacctccgcacatgccctgatggtttttgtgatgcagttgaaagcaaagacgtgtcaata
tgtcctcaggattgtacaactgaacccgttataggaggtcatgagaaaggcattgtgtct
ggcatcagagcaggtcatggaacctgctattgttactctgaaaaatgcttctgtgagaag
gatgatatagaggaggccatgtgtgacgaggtctgcaagaccatcattgccactgccgtg
ctgctctccttcatcgtctccatcctcctgtcctcctacttcatccatcgttaccacaag
aactcccccaagccccccatcacctcggctgagatgaccttccggcggcccgcacagtcc
taccccatcagctactccgctaacaacatgcgccgtggctcgttggactccatggagaac
catgtagccattgacaccttcaaaatacctgaggatcccaaatgggaatttccacgcaaa
aacctggtgctgggcaaaaccttaggagaaggggagtttgggaaggttgtcaaggcaact
gcattccggctgaaaggaaaggctggttacaccacagtagctgtgaaaatgcttaaagac
cacgcctcacatagtgaactgcgtgacctcctgtcagaattcaccttactgaagcaagtc
aaccatccacacgtcatcaagatgtacggagcttgcagccaggatggtccaatgtacctg
attgtagaatatgccaaatatgggtcactgcgcaacttcctacgtgagagccgaaaggtg
ggacccagctacatgttgggcaacgatgccaaccgcaactcgagctacctggagaaccca
gatgagagggcactcaccatgggcgacctgatctccttcacctggcagatctccaggggc
atgcagtacctggctgaaatgaagcttgttcacagggacctcgctgcaagaaatgtccta
gttgcggaggggcgtaagatgaagatttcagactttggtttgtcccgggacgtgtatgag
gaagactcttatgtgaagaggagcaagggccgaatcccagtgaaatggatggcaatagag
tccttgtttgatcacatttacacaacacaaagtgacgtctggtcctttggtgtgctgttg
tgggaaattgtgacactgggtggaaacccgtacccaggcatcgcccctgaacgcctattt
aacctcctcaagactggctacaggatggagaaaccagagaactgcactgaggaaatgtat
aatctgatgcttcgatgctggaaacaggagtcaaacaaaaggcccatattcgcagatatc
agcaaagaactggagaagatgatggtgaaaaaccgggattacctggacctggcagcgtct
acgccagccgacaccctactgtacgacgacgccctctccgaagaggacacacccctagtg
gactgtaataacgcccctctccctcgaaccattccctccacatggattgaaaacaagctc
tatggcatgtcatacccgaactggcctgagaagagcccggtactgctcaacagacttgat
gccactaacccagtctttacaagatatgccaatgatagtgtttatgcaaactggatggct
ttgccttcacccgcaaaaattgtggacaagcttgatagttaa
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