Coregonus clupeaformis (lake whitefish): 121553824
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Entry
121553824 CDS
T08357
Symbol
ldlrb
Name
(RefSeq) low-density lipoprotein receptor
KO
K12473
low-density lipoprotein receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03272
Virion - Hepatitis viruses
cclu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
121553824 (ldlrb)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121553824 (ldlrb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121553824 (ldlrb)
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121553824 (ldlrb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
DUF5050
EGF
EGF_3
hEGF
Motif
Other DBs
NCBI-GeneID:
121553824
NCBI-ProteinID:
XP_041723139
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Position
38:complement(5576169..5595558)
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AA seq
878 aa
AA seq
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MLLNRVGITGLTACCLVLLFHCFALTDAAYTCGTRQFRCGNGKCITSRWVCDGGDDCGDG
TDELPATCEAKTCLPTEFSCGGPLNKCISGTWHCDGKADCENGADEKSCAAKNCTADEFR
CSNGQCISVSFVCDKDNDCSDNSDETSCPTVTCSPNAFQCNNSVCVPRLWACDGDADCAD
GSDEWPQNCAGRDTKPTTKPCGPHEFHCGSGECIHRSWRCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSHQCDRQFDCRDLSDEIDCKNGDECEGLYNFRCKSGKCITMDKVC
NGQKDCRDMSDEPISECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLAKDNKKCEDI
DECADPDACTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTV
DRREYVSVIPRLKNVVALDMDMPGHKIFWSDLYHKKIYSANMTLAGDSSHHSVVIDSQIE
APEGLAVDWIHGNIYWTDSMLQTISVATTDGTRQKTLVSEGLEKPRSIVVDPAKNFMYWT
DWGNEAKIEKSGLNGADRVALVTDNIMWPNGITLDMVNQRLYWVDSKMHTLSSIDVNGGG
RHTLIYNEDKLAHPLSLTVFEEKVFWTDMGDRVVMSANRLTGNDITVLAEDLVQPEDIIV
YHNLKQPIGKNWCTENNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGTDMRKCVAA
STTTASPTAPKTAAPVPTRAPTKQPARPTSTTTTTTTTTTSSAPRAQPQGPDRSSATHSP
QETAVTGQSGYVAMPKVAEASHHTALYIVLPIMMMSLMLFGAVMLWRHWRLKNTNTIHFD
NPVYQKTTEDEMHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgctactgaatcgtgtgggaatcaccgggctgacagcgtgttgcctggtgttgcttttc
cactgttttgctctgacagatgctgcttatacgtgtgggacaaggcagttcaggtgtggc
aatgggaaatgcatcaccagccggtgggtgtgtgacggaggtgatgactgtggtgacgga
actgacgagctgccagccacctgtgaggctaagacctgcctgcccactgagtttagctgt
ggaggcccactgaacaagtgtatctctggaacatggcactgtgatggcaaagctgactgt
gaaaatggagctgatgagaagagctgtgccgcaaagaactgcaccgccgatgagttccgc
tgctccaacggccagtgcatctccgtctccttcgtgtgcgacaaggacaacgactgttcc
gataattctgacgagacttcctgtcccaccgtcacctgcagtcccaacgccttccagtgt
aacaactcagtgtgtgtaccgcgtctctgggcgtgcgacggagacgccgattgtgcagac
ggttcagacgagtggccccagaactgtgccgggagggacaccaaaccgacaacaaagcct
tgtgggccacatgagttccactgtgggagtggggagtgcatccataggagttggaggtgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacctgc
cagccagatgagtttcagtgtaacgatggctcctgtatccatggtagccatcagtgtgac
cggcagtttgactgcagggatctgagcgatgagatagactgcaagaacggggatgagtgt
gagggcctgtataacttcaggtgtaagagtgggaagtgcatcaccatggacaaggtgtgc
aacgggcagaaagactgccgagacatgtccgacgaacctatcagcgagtgtggcaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtactgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctggcgaaggacaacaagaaatgtgaagacatt
gatgagtgtgccgacccagacgcctgcacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggctacgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactgta
gaccgtagagagtacgtcagtgtcatccctagactgaagaacgtggtggccctcgacatg
gacatgcctggacacaagatcttctggtctgacctgtaccacaagaagatctacagcgcc
aacatgaccttggcaggggactcctcccaccacagcgtggtgattgacagccagatcgag
gcgccggagggtctggccgtcgactggatccacggtaacatctactggacggacagcatg
ctccagaccatctctgtggcaaccacggacggaacacggcaaaagacgctggtcagtgaa
ggactagagaaaccaagaagcatcgtggtggacccagccaagaacttcatgtactggact
gactggggcaacgaggccaagatcgagaagagtgggctgaacggagccgaccgcgttgcc
ttggtaacggacaacatcatgtggcccaatggcatcactctggacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccctctccagcatcgacgtcaacggaggagga
cgacacacactcatctacaacgaggacaagctggctcaccccctctctctcaccgtcttc
gaggagaaagtattctggaccgacatgggtgacagagtggtcatgagcgccaaccgcctg
acaggaaatgacatcactgtattggcggaggacctggtacagccagaggacatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgcacagagaacaactttgtgaat
ggaggttgtgagttcctgtgtctgcctgctccccagatcaaccaacactcccctaaatac
acctgtgcctgtcctgatcatatgaccctggggacagacatgaggaagtgtgtggcagct
tcaacaactaccgcttcccccaccgctcccaaaactgcggcccccgtccctaccagagcc
ccaaccaaacagccagctcgtcccacttccaccacaactaccaccactactacaactacc
tcctccgccccccgggcccagcctcagggccctgacaggtcctcggccactcacagtcca
caggaaactgctgtcacaggtcaaagtggatatgttgccatgcccaaagtagctgaggca
tcacaccatactgcgctctacattgtcttacctatcatgatgatgagcctgatgctgttt
ggtgcagtgatgctatggagacactggaggctgaagaacaccaacaccatccactttgac
aaccccgtgtaccagaagaccaccgaggacgagatgcacatctgtagaaaccacagccag
gacggatacacctacccacagagacagatggtgagcctggaagaagacctggcatga
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