KEGG   Coregonus clupeaformis (lake whitefish): 121553824
Entry
121553824         CDS       T08357                                 
Symbol
ldlrb
Name
(RefSeq) low-density lipoprotein receptor
  KO
K12473  low-density lipoprotein receptor
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03272  Virion - Hepatitis viruses
cclu04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03272 Virion - Hepatitis viruses
    121553824 (ldlrb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    121553824 (ldlrb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    121553824 (ldlrb)
Membrane trafficking [BR:cclu04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Low-density lipoprotein receptor (LDLR) family proteins
    121553824 (ldlrb)
SSDB
Motif
Pfam: Ldl_recept_a Ldl_recept_b FXa_inhibition cEGF EGF_CA SGL DUF5050 EGF EGF_3 hEGF
Other DBs
NCBI-GeneID: 121553824
NCBI-ProteinID: XP_041723139
LinkDB
Position
38:complement(5576169..5595558)
AA seq 878 aa
MLLNRVGITGLTACCLVLLFHCFALTDAAYTCGTRQFRCGNGKCITSRWVCDGGDDCGDG
TDELPATCEAKTCLPTEFSCGGPLNKCISGTWHCDGKADCENGADEKSCAAKNCTADEFR
CSNGQCISVSFVCDKDNDCSDNSDETSCPTVTCSPNAFQCNNSVCVPRLWACDGDADCAD
GSDEWPQNCAGRDTKPTTKPCGPHEFHCGSGECIHRSWRCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSHQCDRQFDCRDLSDEIDCKNGDECEGLYNFRCKSGKCITMDKVC
NGQKDCRDMSDEPISECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLAKDNKKCEDI
DECADPDACTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTV
DRREYVSVIPRLKNVVALDMDMPGHKIFWSDLYHKKIYSANMTLAGDSSHHSVVIDSQIE
APEGLAVDWIHGNIYWTDSMLQTISVATTDGTRQKTLVSEGLEKPRSIVVDPAKNFMYWT
DWGNEAKIEKSGLNGADRVALVTDNIMWPNGITLDMVNQRLYWVDSKMHTLSSIDVNGGG
RHTLIYNEDKLAHPLSLTVFEEKVFWTDMGDRVVMSANRLTGNDITVLAEDLVQPEDIIV
YHNLKQPIGKNWCTENNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGTDMRKCVAA
STTTASPTAPKTAAPVPTRAPTKQPARPTSTTTTTTTTTTSSAPRAQPQGPDRSSATHSP
QETAVTGQSGYVAMPKVAEASHHTALYIVLPIMMMSLMLFGAVMLWRHWRLKNTNTIHFD
NPVYQKTTEDEMHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq 2637 nt   +upstreamnt  +downstreamnt
atgctactgaatcgtgtgggaatcaccgggctgacagcgtgttgcctggtgttgcttttc
cactgttttgctctgacagatgctgcttatacgtgtgggacaaggcagttcaggtgtggc
aatgggaaatgcatcaccagccggtgggtgtgtgacggaggtgatgactgtggtgacgga
actgacgagctgccagccacctgtgaggctaagacctgcctgcccactgagtttagctgt
ggaggcccactgaacaagtgtatctctggaacatggcactgtgatggcaaagctgactgt
gaaaatggagctgatgagaagagctgtgccgcaaagaactgcaccgccgatgagttccgc
tgctccaacggccagtgcatctccgtctccttcgtgtgcgacaaggacaacgactgttcc
gataattctgacgagacttcctgtcccaccgtcacctgcagtcccaacgccttccagtgt
aacaactcagtgtgtgtaccgcgtctctgggcgtgcgacggagacgccgattgtgcagac
ggttcagacgagtggccccagaactgtgccgggagggacaccaaaccgacaacaaagcct
tgtgggccacatgagttccactgtgggagtggggagtgcatccataggagttggaggtgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacctgc
cagccagatgagtttcagtgtaacgatggctcctgtatccatggtagccatcagtgtgac
cggcagtttgactgcagggatctgagcgatgagatagactgcaagaacggggatgagtgt
gagggcctgtataacttcaggtgtaagagtgggaagtgcatcaccatggacaaggtgtgc
aacgggcagaaagactgccgagacatgtccgacgaacctatcagcgagtgtggcaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtactgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctggcgaaggacaacaagaaatgtgaagacatt
gatgagtgtgccgacccagacgcctgcacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggctacgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactgta
gaccgtagagagtacgtcagtgtcatccctagactgaagaacgtggtggccctcgacatg
gacatgcctggacacaagatcttctggtctgacctgtaccacaagaagatctacagcgcc
aacatgaccttggcaggggactcctcccaccacagcgtggtgattgacagccagatcgag
gcgccggagggtctggccgtcgactggatccacggtaacatctactggacggacagcatg
ctccagaccatctctgtggcaaccacggacggaacacggcaaaagacgctggtcagtgaa
ggactagagaaaccaagaagcatcgtggtggacccagccaagaacttcatgtactggact
gactggggcaacgaggccaagatcgagaagagtgggctgaacggagccgaccgcgttgcc
ttggtaacggacaacatcatgtggcccaatggcatcactctggacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccctctccagcatcgacgtcaacggaggagga
cgacacacactcatctacaacgaggacaagctggctcaccccctctctctcaccgtcttc
gaggagaaagtattctggaccgacatgggtgacagagtggtcatgagcgccaaccgcctg
acaggaaatgacatcactgtattggcggaggacctggtacagccagaggacatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgcacagagaacaactttgtgaat
ggaggttgtgagttcctgtgtctgcctgctccccagatcaaccaacactcccctaaatac
acctgtgcctgtcctgatcatatgaccctggggacagacatgaggaagtgtgtggcagct
tcaacaactaccgcttcccccaccgctcccaaaactgcggcccccgtccctaccagagcc
ccaaccaaacagccagctcgtcccacttccaccacaactaccaccactactacaactacc
tcctccgccccccgggcccagcctcagggccctgacaggtcctcggccactcacagtcca
caggaaactgctgtcacaggtcaaagtggatatgttgccatgcccaaagtagctgaggca
tcacaccatactgcgctctacattgtcttacctatcatgatgatgagcctgatgctgttt
ggtgcagtgatgctatggagacactggaggctgaagaacaccaacaccatccactttgac
aaccccgtgtaccagaagaccaccgaggacgagatgcacatctgtagaaaccacagccag
gacggatacacctacccacagagacagatggtgagcctggaagaagacctggcatga

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