Coregonus clupeaformis (lake whitefish): 121553934
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Entry
121553934 CDS
T08357
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase lunatic fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu00514
Other types of O-glycan biosynthesis
cclu04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
121553934
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121553934
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
cclu01003
]
121553934
Enzymes [BR:
cclu01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
121553934
Glycosyltransferases [BR:
cclu01003
]
Glycan extension
O-Glycan
121553934
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Gene cluster
GFIT
Motif
Pfam:
Fringe
Galactosyl_T
Glyco_tranf_2_4
Motif
Other DBs
NCBI-GeneID:
121553934
NCBI-ProteinID:
XP_041723260
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Position
38:2237241..2260921
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AA seq
381 aa
AA seq
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MSKGVWRKCALSPAGGASFTCLVMMFLLVAVNKHRGSQVEDVSTEREFGTRSLQSLNSMG
NNDKTEDQVGEKCQAAQVKGFSVYFSELSRGKRAVEHRAVKASDPTPVEELSPADVFIAV
KTTRKYHHNRLDILLDTWISRNMLQTYIFTDGEDDRLRKRMGSHMINTNCSAAHSRQALS
CKMAVEYDTFISSGKKWFCHVDDDNYVNIRPLVKLLSHYSHTHDVYIGRPSLDRPLEATE
RFGNSHTRPVRFWFATGGAGFCVSRGLALKMSPWASGGNFMTTADRIRLPDDCTVGYIIE
ALLGVGLIRSPLFHSHLENLQLVSQTQIHHQVTLSYGTFDSKRNIISIRGAFSLDEDPTR
FRSVHCVLYPDTPWCSALTWY
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggcgtctggagaaaatgcgccctctccccggctggaggagcctcgttcacc
tgtctcgtgatgatgtttcttcttgtcgctgttaacaaacaccgggggagtcaagtggag
gacgtttccaccgagagagagttcgggactcgctccctgcagagtttaaacagcatgggt
aataatgacaaaaccgaggaccaggtcggggagaaatgtcaggcggcacaggtgaagggt
ttctcggtgtacttcagtgagttgagccgggggaagcgggcggtggagcacagagcggtg
aaggctagtgatcctacaccggtggaggagctcagtccggcggatgtgttcatagcggtg
aaaaccaccaggaaataccaccacaacaggctggacatactgctggacacgtggatctcc
agaaacatgctacagacgtacatattcacagacggagaggatgacaggctgaggaaaagg
atggggagtcacatgatcaatactaactgttcagcggcccacagtcgccaggctctgtcc
tgtaaaatggccgtcgaatacgacaccttcatcagctctggcaagaagtggttctgccat
gtggatgatgataactacgtgaacatacgcccccttgtgaaactcctgtctcactacagc
cacacccacgatgtctacattggccggcctagcctcgaccgaccactagaagccaccgag
aggtttggcaactcccacacgcgtccagtgcgtttctggtttgccacaggaggggcaggg
ttctgtgttagtcgaggtctcgccctcaagatgagcccctgggccagtggaggtaatttc
atgacaacagctgatcgtattcgtctccctgacgactgtacggttggttacatcatcgag
gcgttgctaggggtggggcttatccgctccccactgttccactctcacctggagaacctt
cagctggtgtcacagacacagatacaccaccaggtgactctgagttatggaacgtttgat
agtaagagaaacataatcagcataagaggagcgttctcattggacgaagaccctaccagg
ttcaggtctgtccattgtgtcttatacccagacactccgtggtgttcagccctgacctgg
tactga
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