Coregonus clupeaformis (lake whitefish): 121554442
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Entry
121554442 CDS
T08357
Symbol
ddx58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04622
RIG-I-like receptor signaling pathway
cclu04623
Cytosolic DNA-sensing pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
121554442 (ddx58)
04623 Cytosolic DNA-sensing pathway
121554442 (ddx58)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121554442 (ddx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121554442 (ddx58)
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121554442 (ddx58)
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
121554442 (ddx58)
BRITE hierarchy
Motif
Pfam:
RIG-I_C
CARD_2
RIG-I_C-RD
DEAD
ResIII
Helicase_C
PhoH
AAA_22
IstB_IS21
ATP-synt_ab
AAA_19
Motif
Other DBs
NCBI-GeneID:
121554442
NCBI-ProteinID:
XP_045067830
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All DBs
Position
39:9852604..9886510
Genome browser
AA seq
984 aa
AA seq
DB search
MYEFEKSNLRKFSKYVVDFLRPSYVKGFMTTYLNGEVVERILSEESRSVTSAAQVFLDQV
CLLEEQGWYQALLDALYAEGYKGLCEALKRWDFGTLESTKLHRELLQRIEPHFTKHIKTR
DLLVHLGECLRKRECEEIQATENLLGPIAAAERLTDCLKRSDKENWFKLLKMALANCEQT
VALEQLDPDTESSVSEMEVGDEEEGETMTVTFQYTEGSVDDDEGLLKSGNHMTPSETLPT
SATGSQSQGANSGGGIGEVQKGGEKRLREEEEERGGGGGEKRGGGGEKKMRAYQRELAEP
VFQGNNTVICAPTGCGKTVVALAICEQHLKAKGQGAKVVFMATKVDVFNQQYKLFQDHFL
EKDPDIRIDGLCGNLGDQLSMTVVMENNDIIVLTPQILVNAMARGEVPSLSCFSLLILDE
CHNTTGKHPYNIIMMSYLDAKLSTEQNGQHLPQIVGLTASVGIGSFKNQSEAENNIYQLC
ASLDTRIISTIHRHTDELHSYVHTPDKDFFLVRKRQTDPFIRIIHDIMAKIEGLAKTVYN
IESLSNIESRDYGSQKYEQWIVDVQKKCRVLQLEDQEEESRVCRALYNYTEHLRKYNDAL
IINEDARTKDALEYLSAFIQQVKNAGHDETERRLTAYFDGQQGVLQGLSRGGQQENPKLD
ELQYILEEQYRQNDETKSVLFVRTRALADALKSWIEESDTLKFLKPGVLIGRGRKSSQLT
GSGMTLTSKKGVLDSFKSSDNQSKLLIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVR
GRGRAQGSKCILVSDKKDRIDKERHNMEKEKIVERAIRNIQDKPTEMIHKIEVLQHKDKV
CRDMVRMVPERPRTEGSYQLLCSKCKTHSCYTDDIRVLQDSHHIVLDRTLFSRARTQPHP
KPKGFMGLVKTKKLFCHCGLDWGIVASYLTIQDLPVLKIESFVVKNCVTEQQRYYRKWKD
VTFTMKTFDLTDIGDNWTPLSEDQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagtttgagaagagcaatctacggaagtttagtaaatacgtggttgattttttg
cgaccgtcttacgttaaaggcttcatgactacgtacctgaatggagaggttgtagagagg
atcctatcagaggagagcaggtctgtgacgtcagcagcccaggtgtttctagaccaggtg
tgtctcctggaggaacagggatggtaccaggccctgctagacgccctgtacgccgaaggc
tataagggtctgtgtgaggccctgaagcggtgggactttgggaccctggagagcaccaag
ctacacagagagcttctacaacggatagaaccccacttcaccaaacatatcaaaaccaga
gacctgctggtacacctgggggagtgtctcagaaagagagagtgtgaagagatacaggcg
acagagaacctgttggggcctatagcagcagcggagaggctgactgactgtctgaagaga
agtgataaagaaaactggttcaaactgctgaagatggctctggccaactgtgaacagaca
gtggccctggagcaactggaccctgacacagagtcatcagtgtcagagatggaagtgggt
gatgaggaggagggtgaaaccatgactgtcaccttccagtacactgaggggtctgttgat
gatgatgaagggctgctgaagagcggcaatcacatgacaccctctgaaaccctgcccacg
tctgcaacaggtagccaatcacaaggagccaatagtggtggtggtattggtgaggtccag
aaaggaggagagaagaggctgagagaggaggaggaggagagaggaggaggaggaggagag
aagagaggaggaggaggagagaagaaaatgagagcgtaccagagagaactggctgaacct
gtgtttcagggcaacaacacagtcatctgtgccccaaccggctgtgggaagactgtggtt
gccctggcaatctgtgagcagcacctgaaggccaagggtcagggggcgaaggtcgtcttc
atggcaaccaaggtggacgtcttcaaccagcagtataaactgttccaggatcatttccta
gagaaagaccctgacatcaggatcgacggcctttgcggtaacctgggcgaccagctgtcg
atgacggtggtcatggagaacaatgacatcatcgtcttaacccctcagatcctggtgaat
gccatggccagaggggaggttccctctctctcctgcttctctctgttgattctagatgag
tgtcacaacacaacagggaaacacccctataacatcatcatgatgtcatacctggatgcc
aagctcagcactgagcagaacggacaacacctgccccagattgtgggtctgactgcctca
gtggggattggctcgttcaagaaccaatcagaggctgagaacaacatctatcagctgtgt
gccagtctggacacccgcatcatctccaccatccaccgacacaccgacgagctacactcc
tacgtacacacacctgacaaagatttcttcctggtccggaagagacagacagaccctttc
atcaggatcattcatgacatcatggctaagatagaaggactggccaagactgtctacaac
atagagtctctgtctaacatagagagtcgtgactacgggagtcagaagtatgaacagtgg
atcgttgatgttcagaagaagtgcagagttctacagctggaagaccaggaggaggagagt
agagtctgtagggctctgtacaactatactgagcacctgaggaagtataatgatgctttg
atcataaatgaggatgccaggacgaaggacgcgttggagtacctgtcagctttcatacag
caggtgaagaacgcaggacatgacgagacggagagacgactcactgcttacttcgatggt
cagcagggtgtactacagggtctgtccagaggggggcagcaggagaatcctaaattagat
gagttacagtacatcctggaggaacagtaccgacagaatgatgagaccaagtcggtactg
ttcgttaggactcgggccctcgcagacgccttgaagagctggatcgaggaatctgacact
ctgaagttcctgaaaccaggagtattgatcgggagaggacgcaagtccagccagctgacc
ggctcaggcatgacgctgacatctaagaaaggtgtgcttgattcctttaagagctcagac
aatcaaagcaagctcctgattgctacctcggtggccgacgagggcatcgatatcccacaa
tgcaacctggtattgatgtacgagtacgttggcaacgtggtcaagatggtgcaagtcaga
ggacgtggcagggcccagggtagtaagtgtatcctggtgtctgataaaaaggacaggatt
gataaagaaagacataatatggagaaggagaagattgtagagagagccatcagaaacatc
caggacaaacccactgagatgatacacaagatagaggtgttgcagcataaggacaaggtg
tgtcgtgacatggtccgaatggtaccagagagaccccggactgaagggagctaccagctc
ctctgctccaagtgcaagacgcacagctgttacacagacgacatcagagtactgcaggac
tctcaccacattgtgttggaccgcactctgttctctcgagctcgaacacaacctcatcct
aaacccaaaggtttcatggggctggtgaagactaagaagctgttctgtcactgtggactg
gactggggcatagtggcctcatacctgaccatacaggacctgcctgtgttaaagatagag
agctttgtggtgaagaactgtgttacagagcaacagaggtactacaggaagtggaaagac
gtgacctttaccatgaagacctttgaccttacagacataggtgataactggacaccactg
tctgaagaccagtag
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