KEGG   Coregonus clupeaformis (lake whitefish): 121554733
Entry
121554733         CDS       T08357                                 
Symbol
kdm6a
Name
(RefSeq) lysine-specific demethylase 6A isoform X2
  KO
K11447  lysine-specific demethylase 6A [EC:1.14.11.68]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121554733 (kdm6a)
Enzymes [BR:cclu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.68  [histone H3]-trimethyl-L-lysine27 demethylase
     121554733 (kdm6a)
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    MLL3/MLL4 complex
     121554733 (kdm6a)
   Histone demethylases
    121554733 (kdm6a)
SSDB
Motif
Pfam: KDM6_C-hel JmjC KDM6_GATAL TPR_1 TPR_8 TPR_2 TPR_17 TPR_12 TPR_16 TPR_11 TPR_CcmH_CycH TPR_19 TPR_7 TPR_9 RPN7 ARM_TT21_C ANAPC3
Other DBs
NCBI-GeneID: 121554733
NCBI-ProteinID: XP_041724394
LinkDB
Position
4:23135462..23234444
AA seq 1518 aa
MKSCGVSLNVAASATARSLSAAGDEENKMAAGKANEIEEDFPKLTAQERESLFEIDSSLF
GFQRLHEDGARTKALLLKAVSCYDSVILKAEGKVEPEMFCQLGHFNLLLEDYPKALSAYQ
RYYSLKSDYWKNAAFLYGLGMVYFHYNAFQWPVQPPSSEAQAGQRRAIKAFQEVLYIDPS
FSRATEIHMRLGLMFKGNTDYESSLKHFQLALIDSNPCTLSKAEIQFHIAHLYEIQKKFR
AAKEAYESLLQTDNLPAQVKATTLQQLGWMHHTVEQLGDKGTKDSYAIQCLQKSLEADPN
SGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYI
CAVQLDHSHAAAWMDLGTLYESCGQPHDAIKCYINATRSKACTNTAALTHRIKLLQAQLC
NPQPGSLAGGKGTKMLPSIEEAWSLPIPAELTSRQGGLNTAAGSPGSQTQQQQASKSHQG
GEGGQVQTHVSPHPSHTDGQASPAKRKRTASPAKSAVDSWTNHPVQQQIPSWYLTPQKLQ
LLDQLRTNRASLKPPQVQMLDQLENQFSLMQQHQHQVRQQAAGQLRPTLPNGPSLSPNSL
PSPHPLSRTSPVSQTTARPPCTAQPMANIPLSSSPLGRRGNPEAGTVGNNRTPGLPGAGT
LPGGLMGGGGSNGNVPYLQQNCLPHNCTATSTSNLSTPTSNNTSHSSNNTSNAEEAWKSQ
QRTNSTQGLHKGPGSHLAGPNGEHPFSSPSSHPSQAAGSSDQILNQVGHSTGPCPASSSS
FSSSLQRGGAPNHLHSATTTSGAQTKEATPSGSNSSSRLATTAGTSLSPGTTAPTQGLAN
HIQQGAVTTTDSLWSQSQPGSPPPGTLSSDNPQLSALLTGKASNKDVTNHNKNNNHGGVN
QGATMDNNIKVNNIHPGVHHRGPKPLSEHSVASSPLSAMSASTPSPPRFTDPHPPTANSL
TSLISSPSNSGTTGTATTTPQVNGKGLEDSRSPVKVFHSRPALAPWSSVSIYPSSSQVLK
ACRNLGKNGLSNSSILLEKCPPPRPPPPPSPSLPKDKLNPPTPSIYLENKRDAFFPPLHQ
FCTNPSNPVTVIRGLAGALKLDLGLFSTKTLVEANPDHLVEVRTQLSQPTDENWDLSGTR
KMWRCQSSQSHTTIAKYAQYQASSFQESLREENEKKKELEAEAANAESATRRRKGPFKHI
KFGTNIDLSDERKWKLQLQELSKLPAFARVVSAGNLLSHIGHTILGMNTVQLYMKVPGSR
TPGHQENNNFCSVNINIGPGDCEWFAVPEHYWGIINDFCEKNNINFLMGSWWPNLEDLYE
ADVPVYRFIQRPGDLVWLNTGTVHWVQAIGWCNNIAWNVGPLTAYQYKLAVERYEWNKLQ
SVKSIVPMIHLSWNMARNIKVSDSKLFQMIKYCLLRTLKQCQMLRELLQASGKELVWHGR
TRDEPAHYCSICEVEVFDLLFVTSESNSRKTYVVHCQDCARRGSCNLDNFVVLEQYKMDD
LTQVYDQFTLAAPLPSSS
NT seq 4557 nt   +upstreamnt  +downstreamnt
atgaaatcgtgcggagtgtcgctcaacgtcgctgcttctgctactgctcgaagtctcagc
gctgctggtgatgaggaaaataaaatggcggcgggaaaagcgaatgaaatagaagaggac
tttccgaagctaacagcgcaggagagagaaagcttgttcgaaattgacagttcactgttt
ggatttcagaggcttcatgaagatggcgccagaacgaaggccttactgttaaaggctgta
agctgctatgactctgtcatcctgaaggcagaagggaaggtagagccagagatgttctgc
caactgggccacttcaacctcctcctggaggactatccaaaagcattatctgcataccag
agatactacagtttaaagtcggactactggaagaatgctgcctttttatatggcctcggt
atggtttacttccattacaatgcatttcagtggccagtgcagcccccctcctcagaggcc
caggcaggacagcgaagggcgataaaagcgtttcaggaagtgctctatattgaccccagt
ttctcccgagcaacggagatccacatgagactgggcctcatgtttaaaggcaacacagat
tatgagtcaagtctaaagcattttcaactggctttgattgactccaacccctgcactttg
tccaaagctgaaattcagttccacatcgctcatttatatgaaattcagaagaaattcaga
gcagctaaagaagcgtatgagagtttactacagacagacaatcttcctgcacaggtgaag
gctactacactgcaacaactgggctggatgcatcacacagtggagcagttaggggacaaa
ggcaccaaggacagctatgccatccagtgtctgcagaagtcgctagaagcagaccccaac
tctggacagtcctggtacttcctcggcaggtgctactccagtattgggaaagtccaggat
gccttcatctcctacagacagtccattgacaagtctgaggccagcgctgacacctggtgc
tccataggtgtgttgtaccagcagcagaaccagcctatggacgcactgcaggcttacatc
tgtgcagtgcagctggaccacagtcacgcagctgcctggatggacctgggcacgctctac
gaatcctgcgggcagccgcacgacgccatcaagtgttacatcaacgccacgcgcagcaag
gcctgcactaacaccgccgccctcacacaccgcattaaactgctacaggctcagttgtgt
aaccctcagccaggtagtcttgcaggggggaagggtactaaaatgcttcctagtattgag
gaggcgtggagcctgcccatccccgctgagctcacctccagacaggggggcctgaacact
gcagcaggcagcccagggtcacagacacagcagcagcaggcgtctaaatcccaccagggt
ggtgagggaggccaggtccaaacgcacgtctccccccatcccagccacactgatggtcag
gccagccccgccaagaggaaacgtaccgccagcccggctaagagtgctgtggactcgtgg
acaaaccacccggtacaacagcagatccccagctggtacctaacaccacagaagctacag
ctcctggatcagctccggaccaaccgtgccagtctgaaaccaccacaggtgcagatgctg
gaccagctggaaaaccagttctccctcatgcagcagcatcaacatcaggtgagacagcag
gctgcaggacagttgcggcccaccctacccaatggcccctcgctgtccccaaactccctc
ccctcccctcaccccctctcccggacttcacccgtcagtcaaaccacagcccgccccccc
tgcactgctcagccaatggccaacatacctttatcttcaagtccccttgggcggcgaggc
aatccagaggcgggaactgtgggcaataatcgcactcccggtctaccgggtgcagggacg
ttaccgggcggtctaatgggaggtggcgggagtaacggaaacgtgccttacctacagcag
aactgtctacctcacaactgcacagccaccagtaccagtaatctcagtacccccaccagc
aacaacaccagtcacagcagtaataataccagtaatgcagaggaggcctggaagagccag
caacgcaccaactccactcaggggcttcacaaaggtccaggttcacatttggcaggtccc
aatggagaacaccctttctcttctccctcctcccatccctcacaggccgctggctccagt
gatcaaattctaaatcaggtcggacattccaccgggccctgccctgcctcctcttcctcc
ttctcctcttcgctccagaggggcggggcccccaaccacctccactccgccaccactacc
tcaggggcccaaaccaaagaggcaacgccttcaggaagcaacagcagcagtagattggct
accaccgcaggaacgtcgctcagtcccggtaccaccgcccctacgcagggattggctaat
cacatccagcagggggcggtgactaccacagacagcttgtggagccaatcccagcccggc
tctcctcctccgggcacactcagttcagacaatcctcaactctcagccttgctcacggga
aaagccagtaataaggatgttactaaccacaataagaataataatcacggtggtgttaat
caaggagccaccatggacaataacatcaaggtaaacaacatccaccccggtgtccaccac
agaggtcccaaacccctgtcggaacactctgtggcctcctcgcccctctcagccatgtcc
gcctccaccccctcccccccgcgcttcaccgacccccacccccccacagccaacagcctc
accagccttatcagcagcccgtccaacagcgggaccaccggtaccgccaccactacccca
caggtcaacggtaaggggctagaggactctcggagcccagtgaaggtgtttcacagcagg
ccggccctggccccatggtcctcagtctccatctaccccagctccagccaggtgctcaaa
gcatgcaggaacctggggaagaacggcctgtccaacagcagtatcctcctggaaaagtgt
cccccgcccagaccacctccgccaccctctccgtcactgccaaaggacaaactcaacccc
cccacacccagcatctacctggagaataagagggatgcgttcttccctccactccatcag
ttctgtaccaacccctccaaccctgtcaccgtcatcagagggctggccggggcgctcaaa
ctggacctgggtctgttctccactaagaccctggtggaggcaaacccagaccacctggtg
gaggtgcggacccagctgtctcagcccaccgacgagaactgggacctgagtggcacaagg
aagatgtggcgctgtcagagcagccaatcacacaccaccattgccaagtatgcccagtac
caggcctcgtccttccaggagtcactacgggaggagaatgagaagaagaaggagctggag
gcagaggcagccaatgcagagagtgcgacgcggcggaggaaagggcccttcaaacacatc
aagtttggcaccaacatcgacctgtctgacgagagaaagtggaagctgcagctgcaggag
ctcagtaagctgccagcctttgccagggtggtgtctgctggcaacctgctcagccacata
ggacacaccatcctgggcatgaacactgtccagctctacatgaaggtccccgggagcagg
acgccaggtcaccaggagaacaacaatttctgttcagtgaacatcaacattggcccgggg
gactgtgagtggtttgctgtgcccgaacattactggggaatcatcaacgacttctgtgaa
aagaacaacataaacttcctgatgggctcatggtggcccaacctggaggacctgtacgag
gcagacgtccctgtctaccgcttcatccagcgtcccggagacctggtgtggctcaacaca
ggcaccgtccactgggtccaggccatcggctggtgcaacaacatcgcctggaacgtagga
cctctcaccgcataccagtataagctggcagtagagcgatatgagtggaacaagctgcaa
agcgtcaagtccatcgtccccatgatacacctctcctggaacatggccagaaacatcaaa
gtgtccgacagcaagctcttccagatgatcaagtactgtctgctgcggacattgaagcag
tgtcagatgctgcgggagctgctgcaggcgtcaggcaaggagctggtgtggcatggcagg
accagggacgagcccgcacactactgcagcatctgcgaggtggaggtgtttgacctgctg
tttgtaaccagtgagagcaacagcaggaagacgtacgtggtgcactgtcaggactgtgcc
cgtagggggagctgtaacctggataactttgtggtgctggagcagtacaagatggacgac
ctcacccaggtctatgaccagttcacactcgcggctcctctgccttcctcctcttga

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