Coregonus clupeaformis (lake whitefish): 121557107
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Entry
121557107 CDS
T08357
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
cclu03460
Fanconi anemia pathway
cclu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121557107
09124 Replication and repair
03440 Homologous recombination
121557107
03460 Fanconi anemia pathway
121557107
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121557107
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121557107
03036 Chromosome and associated proteins [BR:
cclu03036
]
121557107
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121557107
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121557107
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121557107
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121557107
Multi subunit type E3
BRCC complex
121557107
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121557107
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121557107
BRCA1-A complex
121557107
BRCA1-B complex
121557107
BRCA1-C complex
121557107
BRCA complex
121557107
FA (Fanconi anemia) pathway
Downstream FA components
121557107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-Nse
zf-RING_5
RTT107_BRCT_5
zf-MIZ
PTCB-BRCT
zf-RING_4
zf-ANAPC11
zf-RING_6
zf-rbx1
LIG3_BRCT
YafT
zf-RING_10
DUF305
Baculo_IE-1
Sina_RING
Motif
Other DBs
NCBI-GeneID:
121557107
NCBI-ProteinID:
XP_045068802
LinkDB
All DBs
Position
1:complement(23996258..24009024)
Genome browser
AA seq
1573 aa
AA seq
DB search
MNTMKSPKAEDVRQGISVIWEILQCPICLDLMTTPVSTKCDHQFCKFCMMKLLDSSRRKE
ANCPVCKTKITKRSLQESPGFQRLAEGLQNMVQAYEHDTCTNYFTGMSQVRRHMSVTETV
QKKNGHDVSSDEVWATDHADDEDQGPHQFPMSCSSTIAAKDGFAKLMGLEDSCPVISDEG
FDSGLGDIPPASEKETDDSKATSTTDKQKPALETEIPEVVERAPSRPQKLGKKITTHPQD
PPCHPEKVENQLVRRSSRNNKRESLTKMIDQNQKKSLEKVSEWLMKNSSTEENSEKEKNT
EGSYDSDDSVSLAGSCSPSSPLEDNLRNKDEIPKREGHGKCLEALVFGAVYKRDRRGNRS
YSPQNKAITDPPPPCPAEELQILKKIAKRRMSSKLTPADFVKRPRSEENENSLMDDQREM
TEPQEDSPNEHPKDTEEKMIDLTEELNSNSSDKQGEELDELPEGDNKDNEDVEDSPVFDV
PLRKPGRKSNKKMHGRWQDVDGDLQAQGKVKSENNKQKKPGKKKGENIQAEKSKAAKSLV
LVGVGEGGSDPKIPKSRPTSGQIEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGS
NKKIGTARSTKVVIIDSDCNEMQQSEEAKADTDVDNVACLQNQNTEKSVKKNGCVLNEEM
GGIENLESSEKRSSEMIEAQKVNPVEESIVEVPTTGSPCHADIACSVAMLQSSISTPEAS
VSCSVPESVNQSNPVIKPLDDLRSNVPQETSASQAKCIDMEEDDRNDSELDTEQLLKSFK
ATKRKSFHLGSPNIKRSSFWSNKENTTLTNTQENKHVGTDMEAENGQGFPRTMECPTVQQ
ESGKRTVLENSCCSDLSPPSSSPNHISREEAQRNRKRLRKSVLTRPPQEVVESSNPDANG
KTQKQILARLSGNSSRSALSPNNKVAKSQMESPHQAVGSGLLFPAFGTSEEDLPDPTPVA
SKSQQPYEVEGSIRKSPTELESSHSVGPETVVEPNKMWPENMTGNMANTESSLTPEDLLP
LIVQSVVIQEAERSKGSGEVSTHSPIKSSLKQRKRRKAQRLESSSESDCSGEEEELPSLA
QIFRPLACPPTAVEEEEESVTLLEDHAREQGSYREAGDGTCAAAEDGQREGSPPLCPSPE
WITTSQASVDLFGTPEEAEGMAGDTGLTQESSQFSSEFIATQQKVAMQEELRRLERMMVL
VSEALQEKEGPTGAKVNPGAPYLPALPHPDRSTVSSGLDLQTTLPCGQGTRERAASREGA
QNIGENAASPPPVLGDCEVLGPTPTTPCRTKHEGPGGTGGRLGRQSGRSLRSSMRDLPNQ
VSSGVRGRSGTNAPTSAGLEVKDTSGVIQPSNTHPSIHIPLREPAGVKLVLVASGLSVPE
QSMVKKFAKRMGGRVCSQVTSETTHVIMSTDDDLVCERTLKYFLGIAGRKWVVSFQWISE
CFKQGKVLNETPFEVRGDVVNGLNHQGPMRARTTGYTSLLMKDYEICFQGTFTDMTTGQM
EWMVELCGATVVKEPLLFTGKQKTRQLIVVQPGSDQSPINYQALQRKATVITRGWLFDTV
ATYTLQSLDNYRT
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatgaaatccccgaaggctgaagatgtcagacaggggatctctgtcatctgg
gagatcttgcagtgtccaatatgtttggacttgatgaccacacctgtgtcaacaaaatgt
gaccaccagttttgcaagttttgtatgatgaagcttttggacagcagtaggagaaaggag
gccaactgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagagccctggg
ttccagagattggccgagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccaggtgaggagacatatgagtgtcacagagactgtg
caaaagaaaaacggccatgatgtctcatctgatgaagtgtgggctactgaccatgccgat
gacgaggatcaagggcctcatcagtttccaatgtcctgctcatcaactatagcagccaag
gatggctttgcaaagctcatgggtcttgaagattcttgccctgtcatttcggacgagggg
tttgacagcggcctaggtgacatacctccagcctctgaaaaggaaaccgacgactctaaa
gccacctccaccacagataaacagaagccagcattagagacagaaatacctgaggttgtt
gaaagagctccttcacgacctcaaaagcttgggaaaaagataaccactcatcctcaagat
ccaccatgccatcctgaaaaggtcgaaaaccaacttgtcagacgatcttcgaggaataac
aaaagagagtccttgaccaaaatgattgaccagaatcagaagaaaagtctagaaaaagta
tctgagtggctcatgaagaattcctcaacagaagaaaattctgagaaggagaaaaacaca
gagggctcttatgactcggatgactccgtttctctggcaggaagttgttccccctcctca
cccttagaggataacctcagaaataaggacgagattccaaagagagaaggacatggcaaa
tgtcttgaggcgctggtatttggggctgtttacaaacgagatcgaagagggaaccgcagt
tattcaccacaaaacaaagcgatcacagaccctccaccaccctgtccagctgaggaactc
cagatcctgaagaagattgccaaaaggaggatgagcagtaaactgacacctgctgacttt
gtcaagagaccaagatctgaggagaatgaaaacagtctcatggatgaccaacgagagatg
acagaaccacaagaggattctcccaatgaacacccaaaagatactgaagaaaagatgatt
gacctgactgaggagctgaattctaatagctctgacaagcaaggagaagagcttgatgag
ttgccagaaggtgacaacaaagataatgaagatgttgaggacagtcctgtgttcgatgtg
ccactacggaaacctgggaggaaatcgaataaaaagatgcacggtaggtggcaggacgtc
gacggggatttgcaagcgcaagggaaagtaaagtcagagaataacaagcaaaaaaagcct
ggcaagaaaaaaggggaaaacatccaggcggagaagagcaaggcagccaaatccttagtc
cttgtgggtgtcggagagggtggaagtgaccctaagatacctaagagcagaccaacgtca
ggccagattgaggttcagattgagagttaccctagcagtgaggacccaggaagcccgatc
atgaggagaaccaggaggagtcggaggcttcagctcttcacagaggaagtacaagggagt
aacaagaagatcggcactgcaagatccacaaaggttgtcattattgattcagactgcaat
gagatgcagcaatcagaggaggcgaaagctgacactgacgtggataatgtggcttgtttg
cagaaccaaaatacagaaaagtctgtaaagaaaaacggatgtgttttaaatgaagagatg
ggaggtattgagaacttggagtctagcgagaaaagatccagtgaaatgattgaggcacag
aaagtgaacccggttgaggagtctattgttgaagtcccaactacaggaagtccttgtcac
gctgatattgcttgttcagtggctatgttacaaagttcaattagtacccctgaggcaagt
gtctcatgctctgtgcctgagagtgtaaaccaaagtaatccggttatcaaaccattagat
gacttgagatcaaatgtaccacaggagacgtcagccagccaggccaaatgcattgatatg
gaggaggatgaccggaatgacagtgagctggacactgagcaactgctgaagagcttcaaa
gccaccaaaaggaaatccttccaccttggtagtccaaatatcaagaggagttccttctgg
tccaacaaggaaaatacaactcttacaaatactcaagagaacaaacatgtcggcacagat
atggaagcagaaaatgggcagggatttccaaggacaatggagtgtcccacggtccagcag
gaatctgggaaaaggacagtattagaaaattcttgctgtagtgatttgagcccaccttca
agttcccccaaccatatttcacgagaagaagcgcagagaaatcgtaaaaggctcagaaag
tcagttcttaccagaccacctcaggaagtagtggagtcttcaaaccctgatgccaatggg
aagacccagaaacagattctggccaggctttctggcaacagctcaagaagtgccctcagt
cccaacaacaaagtcgcaaaaagtcaaatggaatctccccaccaagctgtgggttctggt
ctgctctttccagcttttggcacctctgaggaagatctaccagatccgacgcctgtagct
tcaaagagtcagcagccatacgaagtggagggcagcattaggaaaagtccaacagaactg
gagagtagccacagtgttggaccagagactgtagtggagccaaacaaaatgtggccagag
aacatgactggaaacatggccaatacagagtcctccttgactccagaggacctccttcct
ctaattgtccaatcagtagttatccaagaggcagagaggagtaaaggaagtggcgaggtc
agcacacactctcccatcaagagcagcctaaagcagaggaagaggaggaaggctcagaga
ctggagtcttcctcggagtccgactgcagtggggaggaagaggaactgccttcccttgcg
caaattttcagacctttggcttgtccaccaacagctgtggaggaggaggaggaatcggtc
acattgctcgaagaccatgccagggaacaaggaagctacagggaggctggtgatggtacc
tgtgctgcagctgaagatgggcagcgagagggcagtcctcccctgtgccccagtcccgaa
tggatcaccaccagccaggcatctgtggacctgtttggcacaccagaagaagctgaaggt
atggcaggtgacactggcctgacacaggaatcatcacaattttcaagcgaatttattgcc
actcagcaaaaggttgcgatgcaggaggagctgcggaggctggagagaatgatggtgctg
gtgtctgaagcgctccaggaaaaggaggggcccactggggccaaagtcaaccccggggcc
ccatatctcccagcgctgcctcacccagacaggtccacagtttcctcaggcctcgatctc
cagacgaccctgccgtgtggccagggcaccagggagagagctgccagcagggaaggtgcc
caaaacattggggaaaatgccgcctcaccgccccctgttcttggagactgtgaggtcctt
gggcccacccccaccacgccctgccgcaccaagcatgaggggcctggagggactgggggg
cggcttggcagacagtcaggacggagccttaggagcagcatgagagatttgcccaaccag
gtgtcgtcaggggtcagagggcgcagcggaaccaatgctcccacatcagctgggctggag
gtcaaggacacctcaggggtcatccagccctctaacacacacccatcaatacacattcca
ctacgggaacctgctggggtcaagttggtgctggtagcatcaggactcagtgtaccagaa
cagtcgatggtgaaaaagtttgccaagaggatgggaggccgtgtgtgttcacaggttacg
tccgagaccacccacgtcatcatgagtacagatgatgatctggtgtgtgagcgcacgctc
aagtacttcctgggcatcgcaggcaggaagtgggtggtgagcttccagtggatttctgag
tgcttcaaacaagggaaagtcttaaatgagacgccatttgaggtgcgaggagatgttgtg
aacggacttaatcaccaagggcccatgagagcacgcaccacagggtacacaagtctgctg
atgaaggactacgagatctgtttccaaggcactttcaccgatatgaccactggtcagatg
gagtggatggtggagctttgcggcgcgacagtggtcaaagagcctcttctcttcactggt
aaacagaaaactcgtcagctaatagtggtacaaccaggctcggaccaatcaccaataaac
taccaagccctccagaggaaagccacggtcatcacccgtggttggctatttgatactgtg
gcaacctacacccttcaaagcctcgacaactacagaacgtaa
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