Coregonus clupeaformis (lake whitefish): 121558722
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Entry
121558722 CDS
T08357
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121558722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121558722
Enzymes [BR:
cclu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121558722
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121558722
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
121558722
NCBI-ProteinID:
XP_041728052
LinkDB
All DBs
Position
33:complement(270923..275244)
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AA seq
914 aa
AA seq
DB search
MEETSKSEAAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPATTDSFYSAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMAYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHSDAAELYNVTTDLNKVCRQLHDPSVS
LSEVSIGLFSAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNFFKPHVVNCILDGEMMAYNPTADTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNGHKFGNETLKERHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKYWKVYRRNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKRKAPAVAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGSEAHPKAELEKAVARLGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLECLDRKQVVPWQPRHMIHMSPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGSADTSTAQCIAKVEERYGWDDLPTSMFRPFRVYLDRYADIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggaggaaacctcaaaaagtgaagctgctgctccccagagctctgttgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatccagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctgccaccacagactctttctactcggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtatggcctatggcattaaagagagcatgttagccaagctctacata
gacgtcttgggtctccccaagaacggaccagaggctaacaaactgttgaattaccgtacc
cccaccacatctcagggggaggcgggagacttcgccctcatggcctactttgtgttgaag
aaacgctgcacaagccagggcaacctcaccatcagagaagtcaatgactttctggactcg
gtggccatcaacaacgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacagccctggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggagtcagcaaagagacagtgctccaggttttccactcagacgcggccgagctc
tacaatgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctctgtgtcc
ctcagcgaagtgtccattggcctgttctctgccttcaaacctatgctggctgccgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccaactgcacaaggatggcgatgtctacaaatacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcaccgctagagggctccctgacgcctttc
atccacaatttcttcaagccccacgtagtcaactgcatcctggatggggagatgatggcg
tacaaccccaccgccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggacgattccgagctgcagacgtgcttttgcgtattcgacgtacttcttgtcaacggc
cacaagtttggcaacgagacgttgaaggagcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaaccatgcaagaggtg
gtgaacgccctcaacgaagccatcgacaacagggaggagggcatcatggtgaaagatccc
tcatccatctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttccttgtcgcggtggccgaagctccgaagcctgga
gagaaaccctctgtcttccacacgctctgtcgcatcggctccggctacaccatgaaggag
ctgtacgacttggggctgaagctggccaagtactggaaagtctaccggaggaacgaccct
ccggcctctatcctgtgtgggacggagagaccagaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgacatgtacaaaaccaactgc
acgctacgcttccccaggattgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacaatgacgagcccgaaaagaagaagcgcaaggcaccagcagtggcc
aagcccaagaaggctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgtc
acaaaggagacagatatgtttgaggacgtggagttttgcgttatgaacggcagcgaggcg
caccccaaagcggagctggagaaagcagtggcccgattaggcggtatcgtggtccagaac
ccgggaccggatacctactgtgtgatcgctgctgtggagaacatgcgtgtgaagaacctg
atctcttcagaccagcacgacgtggtgtgggctgcctggctgctggagtgcttagacaga
aagcaggtggtgccatggcaaccacgtcacatgatacacatgtcgccctccaccaaggag
cactttgccaaggaatatgactgctacggagacagctacttcgtggacacggacgagcag
cagctgagggaagtctttgggcggattggcagcgcggacacatcgacggcacagtgcatc
gctaaggtggaggaacgctacggctgggacgacctccccactagcatgttcagacctttc
agggtctacctggacaggtacgcagacataggagaccctaaaagcatcgtaccagccacc
tgtctggacacgcgggctctggaattccgcttccatggagggacagtagtgcagaagctc
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagatcgttagagaatcatgggtaacagagtct
atcaaagcagggtttttgcggaatgacaatgactacttagtgtga
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