Coregonus clupeaformis (lake whitefish): 121566851
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Entry
121566851 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1 isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04530
Tight junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121566851
09142 Cell motility
04810 Regulation of actin cytoskeleton
121566851
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121566851
NCBI-ProteinID:
XP_045070314
LinkDB
All DBs
Position
5
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AA seq
1676 aa
AA seq
DB search
MGNVESQNSDHTFYGTQHGHLSRKHTSRSLRISNKHQSSSGSTRRSHDRHTSQGKVEHRN
SETSTRSSSTPSIPQSLADNALEPFNQTNVLSDFSPIWVDRMAMNLRPVSFHTHLENPSV
GPQLDKPSVGPHLDNPSVGPQLDAASPGARPQGPQDRGLGLYSNTGEVTYLQKTRDGPRE
PREGVSFKKKRSKSADMWREDSLEFSLSDLSQEHLTSTEDIIDTEEADDRDFPDCEGLMG
LVSPEGLEGVDAAGRANSLDQLYGVQKSPTRRPAARYAKWHYDAKRAAREGEDDKMLSPS
EEDGNSYGAFTLPCRRSHCLSEGLTNHQAATCNAMQGRRAQTIQDVTAGEGSEYEDSGID
GVTAEGAEHQSRRYKTMSMSFSVCSAAGRSMFAGSDSGSSSGGAPSEGVQGVYENFRQEL
EMSSCQTESLEEAGSALSDEQSIMSSAYQSDPLLSVAQGTVRKAGRLAVKNFLVHKKNKK
VESATRRKWKTYWVCLKGCTLFFYETDGRSGIDHNSVPKHAVWAENSIVQAVPEHPKKDF
VFCLSNSLGDAFLFQTCSQTELENWITAIHSACAAAVARQHHREDTVRLLRAEIRKLEQK
IDMDEKMKKMGDMQLSAVTDTKKRKTILDQIFLWEQNLEQFHMGLFRFRCYLSSLQGGEL
PNPKRLLAFASRPTKLTMGRLGIFSVSSFHALVAARTESGVRRRTQAMSRSSSSKRKSRF
SSLWVLDTTSKKKTKVHPTINQVFADGEEPVKKPLDGICDVDTARESVKSDEGAVKKIPQ
VNSDSHMTDSDIWVPDHLTPSWVCLPNDQPVLAIIQPGESALDALETICKAHQLDPAKHY
LRLKFLIENQVQFYIPKPEEDVCDLLYKEIELGSKITKVIQFDRDESCMIGYGFSISVVE
EDSVQQLYITDVKAGGLAFAKGLNAGDEILQLNGKDSCILNFGDMKEAFSQASLSLTVNT
LPSTDRRQLCYLPPRRSDAQEDLYTDIFSMSQEEILDDGVGLMLESSGDSLDDDSELFSE
ADQCRKRSKRSSESIYDMLHLSTEQVAAFCRSLHDMNPSECATSSSSPSLESPFPPPATR
QLSDADKLRKVICELVETERTYVKDLNCLIWRYLTPLQKETCLTQDELDILIGNLPEMVE
FQVEFLKTLEDGTRLVPDLEKLERVDQFKKILFSLGGSFLYYADRFKIYSAFCASHTKVP
KVLVKAKTDADFKAFLEERNPKQQHSSTLESYLIKPIQRVLKYPLLLRELYSLTDPDSEE
HYHLNVAMKAMNKVASHINEMQKIHEEFGLVFDQLIAEQSGDKKEVADLSMGDMLLHTSV
AWINPPSSLGKWKKDPQLAAFIFKTAVVFVCKDGSKQKKKMGGSHRASSVSSEDKDPFRF
RHMISTDTLQVRALNNQDGEGSAVCEIVHVKSESEGRPERTFHLCCSSVDSKKDFLKTIH
SILRDKQRRQLMKTESLPPNQQYVPFGGKRLCALKGARPAMHRAVSDPARTLGRRKLVRN
RFTIDTDIVFDGEPDQDSPLSPLSPEEPEGRGQKEGQGRGETDRWVEEQFDLERYEEEQE
TQAEGGGGDVKETDILSDDDDFCQSVRGPSTEPPSTTDLEGPVGALSLGEEGQEVGPKHP
QLQGATGTTTPGMRLSHLGKQCALVGVSVDDQGAREEGEDIWVRREDCPPGHTELD
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgtagagagccagaacagcgaccataccttctacggtacccaacatggccac
ctgtcccgcaagcacacgtctcgctccctccgcatctccaacaagcaccagtccagctcc
ggttccacccgccgctcccacgaccgccacacctctcagggcaaagtagagcaccgtaac
tctgagacctccacgcgctccagcagcacccctagtatcccccagtctctagcggacaac
gccctggagcccttcaaccagaccaatgtcctgtcagacttttcccctatctgggtggac
cgcatggccatgaacctccggcccgtctccttccatacccacctggagaacccctctgta
gggccccagctggacaaaccctctgtagggccccacctggacaacccctctgtagggccc
cagctagacgcagcatcaccaggggctagaccccaggggccccaggacagaggactaggc
ctgtacagtaacactggggaggtgacctacctccagaagaccagagatggacccagggaa
ccccgggagggggtcagcttcaagaagaagaggtccaaatcagctgacatgtggagagaa
gacagtctggagttcagtctgtcagacctcagccaggaacacctcaccagcacagaggat
atcatcgacaccgaggaggcagacgacagggacttccctgattgtgaaggcctgatgggg
ctcgtgtccccagagggcctggagggtgtggacgcagcaggccgggccaactccctggac
cagctgtacggagttcagaagagcccgacccgccggcccgcggcgcgctacgctaagtgg
cactacgacgctaaacgcgccgcccgggagggagaggacgataagatgctgtctccgtcg
gaggaggacgggaactcgtacggagcgttcactctgccctgccgacgctcacactgcctg
tccgagggcctgaccaatcaccaggctgccacctgtaacgccatgcagggccgcagggca
cagaccatacaggatgtgacggccggagagggcagtgagtatgaggacagtggcatcgac
ggggtgacggcggagggggcggagcatcagtcccgacgctataagaccatgtctatgtcc
ttctccgtgtgctcggcggcagggcggagcatgttcgctggcagcgacagcggaagcagc
agtgggggagcgcccagtgagggggtccagggtgtctatgagaacttcagacaggagttg
gagatgagctcatgtcagacagagagtctggaggaggcggggtcagcactgagcgacgaa
cagagcatcatgagctcagcctaccaatcagatcccctgctcagcgttgcccaaggaacc
gtgaggaaggcgggccgtctggccgtcaagaacttcctggttcacaagaagaacaagaag
gtggagtcagccaccaggaggaagtggaagacctattgggtctgcctcaaaggatgcact
ctgttcttctacgagacagacgggcggtcggggatcgaccacaacagtgttcctaaacat
gcggtgtgggctgagaacagtatcgtccaggccgtacctgaacaccccaagaaggacttt
gtcttctgtctcagcaactctctaggggacgcattcctcttccagacctgcagccagacg
gagctggaaaactggatcacggccatccactcggcgtgcgcggcggcggttgctaggcag
catcaccgggaggacacggtgcgtctgttgagggcggagatcaggaagctggagcagaag
atagacatggacgagaagatgaagaagatgggagacatgcagctgtccgctgtgaccgat
accaagaagaggaagactatactggaccagatctttctgtgggagcagaacttagagcag
ttccacatgggtctgttccggttccgctgttacctgtccagtctgcagggaggggagctg
cccaaccccaaacgcctgctagccttcgcctccagacctaccaaactgaccatgggacgc
ctcggaatcttctccgtctcttcctttcatgcgctggtggcagcccgtacagagagcggg
gtgaggagacgtacccaggccatgtctcgttcctcctcttccaaacgtaagagcaggttc
tcctctctgtgggtcctggacactacctccaagaagaagaccaaagtccaccccaccatc
aaccaggtctttgctgatggtgaggagccagtgaaaaagcctctggatgggatctgtgat
gtggacactgccagggagagcgtgaagagtgatgagggggcagtgaagaaaattcctcag
gtcaactcagacagtcacatgacagacagtgatatctgggtgcctgaccacctgaccccg
tcctgggtgtgtcttcctaacgatcagcctgtcctcgccatcatccagcctggagagtcc
gctctggacgcactggagaccatctgcaaggcccaccagctggatcctgccaaacattac
ctccgcctcaagttcctcatcgagaaccaagtccagttctacatccctaagccggaggag
gacgtgtgtgacttgctttataaagagatagagctgggctccaaaataaccaaagtcatc
cagttcgacagggatgagtcctgtatgattggttacgggttctctatctcagtggtggag
gaggattcggtgcagcagctctacattaccgatgtgaaggcgggaggattagcctttgct
aaaggtctaaatgcgggtgatgagatcttgcagctgaatgggaaagactcgtgcatattg
aacttcggggacatgaaggaggcgttctcccaggcctccctgtccctgaccgtcaacact
ctgccctctacggaccgacgccaactctgttacctgcctccccgacgctctgacgcacag
gaggacctctacacagacatcttctctatgagccaggaggagattctggatgacggggtc
ggtctgatgctggagagttctggagacagcctggatgatgactctgagctcttcagtgag
gcagaccagtgcagaaagaggagcaagcgctcctccgagtccatctatgacatgctgcat
ctgagtacggagcaggtcgcagcgttctgccgcagtctccatgacatgaatccgtctgag
tgtgccacaagttcctcgtcccccagcctggagtcgccctttcctccacccgccacccga
cagctctccgacgccgacaagctacgcaaagtaatctgtgagctggtggagacggaacgc
acctatgtcaaagatcttaattgtctcatttggaggtatttaaccccactgcagaaggag
acctgcctcactcaggatgagctggacattctgattgggaacctgcctgagatggtggag
ttccaggtggaattcctgaagactctagaagacgggaccagattggttccggacctggag
aagctggagagagtggaccagtttaagaaaatcctcttctctctaggaggttccttcctg
tactatgcagaccgttttaagatctacagtgcgttctgcgccagccacaccaaagtgcca
aaggtgctcgtaaaagctaagacagatgcagacttcaaggcgtttctggaagagaggaac
cctaaacagcaacactcctcaaccctggagtcctacctgatcaagcccatccagagagtc
ctgaagtacccacttctactgagggagctgtactcgctgactgaccctgacagtgaagaa
cactatcacctgaatgttgctatgaaggccatgaacaaggtggccagtcacatcaatgag
atgcagaagatccacgaggagtttgggttggtgtttgaccagctcatagcagagcagagt
ggagacaagaaagaggttgctgatctgtcgatgggtgacatgctgctccacaccagcgta
gcctggatcaaccctccctcctccctgggcaaatggaagaaagacccccaactggctgca
ttcatcttcaaaacagctgtggtgtttgtgtgtaaggatggctccaagcagaagaagaaa
atgggtggctcccatcgagcatcgtcagtctcgtctgaagacaaggacccattccgcttc
cgtcacatgatctccacagacaccctccaagtccgagccctcaataaccaagacggagag
ggctctgccgtgtgtgagatcgtccacgtcaagtccgagtcagaaggacggccggagagg
acattccacctgtgctgcagttctgtggacagtaagaaggacttcctgaagacaatccac
tccatcctgagagataaacaacggcgtcagctgatgaagacagagtctctaccccccaac
cagcagtacgtccccttcggaggcaaacgcctctgtgccctgaagggagcgagacctgcc
atgcacagagcagtgtcagacccggcgcggaccctgggccggaggaagctggtgcggaac
cgtttcaccatcgacacagacatcgtcttcgatggcgaaccggaccaggattcccctctg
tccccactgtcccccgaagagcctgaggggcggggacaaaaggaaggacagggacgggga
gagacagaccgctgggtggaggagcagtttgacctggagcgttacgaggaggagcaggag
acgcaggcggaaggaggaggaggagacgtgaaagagacggacatccttagtgacgacgac
gatttctgccagtctgtcagaggaccctccactgaacccccatccaccacagacctagag
gggcctgtaggggccttgtccctgggagaggaaggccaagaggtgggccctaaacacccc
cagctccagggagccacggggaccactaccccagggatgaggctctcccacctggggaag
cagtgtgccctggttggtgtgagtgtggatgaccagggggctagggaggagggtgaggac
atctgggtacgcagggaggactgcccccccggacacacagagctagactag
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