Coregonus clupeaformis (lake whitefish): 121567684
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Entry
121567684 CDS
T08357
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04530
Tight junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121567684
09142 Cell motility
04810 Regulation of actin cytoskeleton
121567684
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121567684
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
121567684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_Tiam1
RhoGEF
Tiam_CC_Ex
PH
RBD
PH_9
PDZ
SOS1_NGEF_PH
PDZ_6
PH_11
PDZ_2
Motif
Other DBs
NCBI-GeneID:
121567684
NCBI-ProteinID:
XP_041733832
LinkDB
All DBs
Position
6:13249225..13419206
Genome browser
AA seq
1664 aa
AA seq
DB search
MGNVESQNGDHAFYGTQHGHLSRKHMSRSLRISNKHHQSQSSSGSTRRTRDASQGKVEHR
NSETSTRSSSTPSIPQCLADHALEPFNQTNVLSDFSSPIWVDRMAMNLRPVSFHTHLDNP
SVGLHLDAASPGARPHDPQGLQDGGLSLYSNKGEATYLQKTRDGPREPREGVSFKKKRSK
SADMWREDRLEFSLSDLSQEHLTSTEEIIDTEEAEDFPDCDGLLGLVSPEGLEGVDAAGR
ANSLDQLYRGQKTPTRRPAGRFAKWHHDANSAAREGEDDKMVSPSEEDGNSYGAHTLPCR
RSHCLSEGLTDHQAATCTTMQGRRAQTIQDVTAGEGSEYEDSGIDGVTAEGAEHQSRRYK
TMSMSFSVCSAAGRSMFTGSDSGSSSGGAPSDRAQGVYENFRQELEMSSCQTESLEEAGS
AMSDEQSTMTSAYQSDPLHSVAQGTVRKAGQLAVKNILVHKKNKKVESATRRKWKSYWVC
LKGCTLFFYETDGRSGIDHNSVPKHAVWAENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQ
TCSQTELENWITAIHSACAAAVARQHHREDTVRLLRAEIRKLEQKIDMDEKMKKMGDMQL
SAVTDTKKRKTILDQIFLWEQNLEQFHMGLFRFRCYLSSLQGGELPNPKRLLAFASRPTK
LAMRRLGIFSVSSFHALVAARTESGVRRRTQAMSRSSSSKRKSRFSSLWVLDTTSKKKTK
AHPTINQVFAVGEEPVKKPLDGIYDVDTARESVKSGGGTVESLPQVDSDSHMTDSDIWVP
DHLTPSWVCLPNDQPVLAIIQPGESALDALETICKAHQLDPTKHYIRLKFLLENQVQFYI
PKPEEHLCDLLYKEIELGSKITKVIQFDRDESCMIGYGFSISVVEEDSVQQLYITDVKAG
GLAFARGLNAGDEILQLNGKDSCRLNFSDMKEAFSQASLSLTVNTLPSTDRRQICYLPPR
RSDAQDDLYTDMFSMSQEEILDDGVGLVLDSSGDSLDDDFEMFSEADQCRKSTEQVAAFC
RSLHDMNPSECATTSSSPSLDSPFRPPATGTASRQLSDADKLRKVICELVETERTYVKDL
NCLIGRYLTPLQKETCLTQDELDILIGNLPEMVQFQVEFLKTLEDGTRLVPDLEKLERVD
QFKKILFSLGGSFLYYADRFKIYSAFCASHTKVPKVLVKAKTDADFKAFLEERNPKQQHS
STLESYLIKPIQRVLKYPLLLRELYSLTDPESEEHYHLNVAMKAMNKVASHINEMQKIHE
EFGLVFDQLIAEQSGDKKEVADLSMGDLLLHTSVAWINPPSSLGKWKKDPQLAAFIFRTA
VVFVCKDGSKQKKKMGGSHRVSSVSSEDKDPFRFRHMISTDTLQVRALNNQDGEGSAVCE
IVHVKSESEGRPERTFHLCCSSVDSKKDFLKAVHSILRDKQRRQLMKTESLPPNQQYVPF
GGKRLCALKGARPAMNRTVSDPARTLGRRKLVRNRFTIDTDIVFDGEPDQESPLSPEEPE
GQGQREGQGKEQGEVQATDLGEVQAGDTDRWVEEQFDLECYEEEQAAQKETQVEGGGDVK
ETDILSDDDDFCQSVRGPSTESPSNTDLEGPVGGLSLGEEGQQGGHKHHQPQGATGTTTP
GMRLSHLGKQCVLAGMSVDDQRAEDIWVRRENCPLDVDAVTQQS
NT seq
4995 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgtggagagccagaatggcgaccatgccttctacggtacccaacatggccac
ctgtcccgtaagcacatgtctcgttccctccgcatctccaacaagcaccatcagtcccag
tccagctctggttccacccgccgcacccgcgacgcctctcagggcaaagtagagcaccgt
aactctgagacctccacgcggtccagcagcacccctagtatcccccagtgtctagcggac
cacgccctggagcccttcaaccagaccaatgtcctgtcagacttctcctcccctatctgg
gtggaccgcatggccatgaacctccggcccgtctccttccatacccacctagacaacccc
tctgtagggctccatctagatgcagcatcacctggggctagaccccacgacccccagggt
ctacaagacggaggactaagcctatacagtaacaagggggaggcaacctacctccagaag
accagagacggacccagggaaccccgagagggggtcagcttcaagaagaagaggtccaaa
tcagctgacatgtggagagaagacaggctggagttcagtctgtcagacctcagccaggaa
cacctcaccagcacagaggagatcatcgacacggaggaggcagaggacttccctgattgt
gatggcctgctggggctcgtgtcccctgagggtctggagggtgtggacgcagcaggccgg
gccaactccctggaccagctctaccggggccagaagaccccgacccgccggcccgctgga
cgcttcgctaagtggcaccacgatgctaacagcgccgcccgggagggtgaggatgataag
atggtgtctccgtcggaggaggacgggaactcgtacggagcgcatactctgccctgccga
cgctcacactgcctgtctgaggggctgaccgatcaccaggctgccacctgcaccaccatg
cagggacgcagggcacagaccatacaggatgtgacggccggagagggcagtgagtatgag
gacagtggcatcgacggggtgacggcggagggggcggagcatcagtcccggcgctataag
accatgtctatgtccttctccgtgtgctcggcggcagggcggagcatgttcactggcagc
gacagcggaagcagcagtgggggagcgcccagtgacagggcccagggggtctatgagaac
ttcagacaggagttggagatgagctcatgtcagacagagagtctggaggaggcggggtca
gccatgagtgacgagcagagcaccatgacttcagcctaccaatcagatcccctgcacagc
gttgcccagggaaccgtgcggaaggcaggccagctggccgtcaagaacatcctggttcac
aagaaaaacaagaaggtggagtcagccaccaggaggaagtggaagagctactgggtctgc
ctcaaaggatgcactctgttcttctacgagacggacggacggtcagggatcgaccacaac
agtgttcctaaacatgcggtgtgggctgagaacagtatcgtccaggccgtacctgaacac
cccaagaaggactttgtcttctgcctcagcaactctctaggggacgcattcctcttccag
acctgcagtcagacggagcttgagaactggatcaccgccatccactcggcgtgcgcggcg
gcggttgctaggcagcatcaccgggaggacacggtgcgtctgttgagggcggagatcagg
aagctggagcagaagatagacatggacgagaagatgaagaagatgggagacatgcagctg
tctgctgtgaccgataccaagaagaggaagactatactggaccagatcttcctgtgggag
cagaacttggaacagttccacatgggtctgttccggttccgctgttacctgtccagtctg
cagggaggggagctgcccaaccccaaacgcctgctagccttcgcctccagacccaccaag
ctggccatgagacgcctcggaatcttctctgtgtcgtcctttcatgcactggtggcagcc
cgtacagagagcggggtgaggagacgtacccaggccatgtctcgttcctcctcatccaaa
cgtaagagcaggttctcctctctgtgggtcctggacactacctccaagaagaagaccaaa
gcccatcccaccatcaaccaggtctttgctgttggtgaggagccagtgaaaaagcctctg
gacgggatctatgatgtggacactgccagggagagcgtgaagagtggtggtggaacggtg
gagagccttcctcaggtcgactcagacagtcacatgacagacagtgatatctgggtgcct
gaccacctgaccccatcctgggtgtgtcttcccaacgaccagcctgtcctcgccatcatc
cagcctggagagtccgctctggacgcactggagaccatctgcaaggcccaccagctggat
cccaccaaacattacatccgccttaagttcctcctggagaaccaagtccagttctacatc
cctaagcctgaagagcacctgtgtgacttgctttataaagagatagagctgggctccaaa
ataactaaagtcatccagttcgacagggatgaatcctgtatgattggttacgggttctct
atctcagtggtggaggaggattcggtgcagcagctctacataaccgatgtgaaggcggga
ggattagccttcgctagaggtctgaatgcgggcgatgagatcttgcagctgaatgggaag
gactcgtgcagactgaacttctcagatatgaaggaggcgttctcccaggcctccctgtcc
ctgaccgtcaacactctgccctctacagaccgacgccagatctgttacctgcccccccga
cgctctgacgcacaggatgacctctatactgacatgttctcaatgagccaggaggaaatt
ctggatgacggggtcggtctggtgctggacagttctggagacagcctggatgacgacttt
gagatgttcagcgaggcagaccaatgcagaaagagtacagagcaggtcgcagcattctgc
cgcagtctccatgacatgaatccgtctgagtgtgccacaacctcctcgtcccccagcttg
gactcgcccttccgtccccctgccaccggcaccgccagccgacagctctccgacgccgac
aagctacgcaaagtaatctgtgagctggtggagacggaacgcacctatgtcaaagatctt
aattgtctcattgggaggtacttgacccccctgcagaaggagacctgcctcactcaggac
gagctggacattctgattgggaacctgccggagatggtgcagttccaggtggaattcctg
aagactctagaagacgggaccagattggttccagacctggagaagctggagagagtggac
caattcaagaaaatcctcttctctctaggaggttccttcctgtactatgcagaccgtttt
aagatctacagtgcgttctgcgccagtcacaccaaagtccccaaggtgctcgtaaaggct
aagaccgatgcagacttcaaggcgtttctggaagagaggaaccctaaacagcaacactcc
tccaccctggagtcctacctgatcaaacccatccagagagtcctgaagtacccactacta
ctgagggagctgtactcgctgactgaccctgagagtgaagaacactatcacctgaatgtt
gctatgaaggccatgaacaaggtggccagtcacatcaatgagatgcagaagatccacgag
gagtttgggttggtgtttgaccagctcatagcggaacagagtggagacaagaaagaggtt
gctgatctgtcgatgggtgacttgctgctacacaccagcgtagcctggatcaaccctccc
tcctccctgggcaaatggaagaaagacccccaactggctgcattcatcttcagaacagcc
gtggtgtttgtgtgtaaggacggctccaagcagaagaagaaaatgggtggctcccatcga
gtgtcgtcagtctcgtctgaagacaaggacccattccgcttccgtcacatgatctccaca
gacaccctccaagtccgagccctcaataaccaagacggagagggctctgccgtgtgtgag
atcgtccacgtcaagtccgagtcagaaggacggccggagaggacattccacctgtgctgc
agttctgtggacagtaagaaggacttcctgaaggcagtccactccatcctaagagataaa
caacgacgtcaactgatgaagacagagtctctacctcccaaccagcagtatgtccccttc
ggaggcaaacgcctctgtgccctgaagggagccagacctgccatgaacagaacagtgtca
gacccggcgcggaccctgggccggaggaagctggtgcggaaccgtttcaccatcgacaca
gacattgtcttcgacggcgagccagaccaggagtccccactgtcccctgaagagcctgag
ggacagggacaaagggaaggacagggaaaggaacagggggaggtgcaggctacagacttg
ggggaggtgcaggcaggggatacagaccgctgggtggaggagcagtttgaccttgaatgc
tacgaggaggagcaggcggcgcagaaggagacgcaggtggaaggaggaggtgacgttaaa
gaaacagacatccttagtgatgatgatgatttctgccagtctgtcagaggaccatccact
gaatcaccgtccaacacagacctagaggggcctgtagggggcctgtccctgggagaggaa
ggccaacaggggggccataaacaccaccagccccagggagccacggggaccaccacccca
gggatgagactttcccacctggggaagcagtgtgtcctggctgggatgagcgtggatgac
cagcgggctgaggacatctgggtacgcagggagaactgtcccctggacgttgatgctgtg
acacaacagagctag
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integrated database retrieval system
