Coregonus clupeaformis (lake whitefish): 121568622
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Entry
121568622 CDS
T08357
Name
(RefSeq) transient receptor potential cation channel subfamily M member 4-like
KO
K04979
transient receptor potential cation channel subfamily M member 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121568622
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121568622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
LSDAT_prok
Ion_trans
Motif
Other DBs
NCBI-GeneID:
121568622
NCBI-ProteinID:
XP_045073937
LinkDB
All DBs
Position
Unknown
AA seq
1262 aa
AA seq
DB search
MIPEIIVRLKILQSEEQKAAARKDQSWIPNIIRKRVCTTFVEDSLSNGLLCQCGGMRETH
GSNATGDYFGAAIVSQWDSSQHSSEYPTDAFGELEFAGAGRRHSHFLRLSFDTPPQIVYS
LMTAHWGVPSPNLVVSVVGGGGCEKVKTWVREVLRQGLVKAAHRTGAWIVTGGLREGVGR
CVGEAVRDHAAAASSLSQKKVIAVGVAPWGMVHNREQLVNAQGSFPARYYVQNTSRDSCC
LDNNYQAFLLVDDGSVGRRGEETAFRSKMEDYISHQRTGIWGSGSIEIPVLCMLISGEAA
MLKRVDLSLRKATPWLVLNGSGPAADLICELLDALSDVPMSCTSPPPEGEGSKSPSVELR
ERTRERVRRHFPAEADREKLVDRALSIYQNRDLISVFHGEQDSPDDFDTVLLKALVRASK
RVSSDASEYTEELKLAVAWNRVDIANSELFNGDIQWRYEDLEDSMTDALINNKPQFVRLF
NENGLNILDYLNYQRLEGLYRSLSNSSLAYTLLQRRLTERQSLARSLPTVPCSPDEPTPL
KSPQNPMSPISGPSSAKELSLYEVSRLLWDILGDVCQPFYYSPLGLDKRISTWRTLKQVN
KLLLGDCPYREQRCVYPWASLFIWAVLQNRSEMAIYFWEMAGESVLSALAGCKILRELSK
LESETAAKLSMKELAQKFENLAHDVFSECYQSSESRSFTLLIRQSPVWGDATCLEMATAA
DARIFFSHDGLQSLLSQIWWGDMERSTEVWKLILTFFLPPLIYTNLISFREPEEEGKTEQ
VSHGEDTDSLDGGDATMFSLTDIMDEDAEEYAAIRVNLKGAPSSNPKRPFVLLRWREFWF
APVTAFLGNVLMYFLFLCLFAFVLLLDFKPPPPHGPSTLEFILYFWVFTLVCEEFRQTFF
RGSTTLYQRMKLYIQDMWNKCDITAISLFALGMCCRMFPWSYEFGRAVMAVDYMVFTLRL
IHIFAIHKQLGPKIIIVEKMMKDVFFFLFFLAVWLIAYGVANQALLYSYDPRPGWIFRRV
FYRPYLHIFGHIPIHEMDADKLEEGIECTNNVTLMEAGAEPCMSTYANWLVVILLVIFLL
VTNILLVNLLIAMFSYTFSKVQEHSDTYWKFQRYNLITEYHSRPCLAPPFIILSHLHLFI
KRHIRKIPSVKIKHFVLDIRGRQASRLNTWEAIQKENILSAQNKREREKESERLKRTSAK
VDSVLKQMVEIRDHGCRIKMLETELEYCSSALSWMVQALSQSNLIKPTCPPPALRADPSD
GE
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgataccagaaataattgtaaggttaaagattctgcaatcagaggagcagaaagctgca
gcaagaaaggatcaaagctggatccccaacatcatcaggaagagagtatgcaccacattc
gtagaggactctttaagcaatggtttgttgtgtcagtgcgggggcatgcgggagacacac
ggctccaacgctacaggagactatttcggagccgccatcgtcagccagtgggacagctcc
cagcactcctcagagtaccccaccgacgccttcggagagctggaattcgcaggggctggc
aggagacacagccatttcctgcgtctgtcatttgacaccccacctcagatcgtgtacagc
ctgatgacggcccactggggggtgccctcccccaacctagtggtttctgttgtggggggt
ggggggtgcgagaaggtcaagacctgggtcagggaggtgctgagacaggggctggtcaag
gcggcacacagaacaggggcgtggatagtgacgggggggctgagggagggggtgggtcgt
tgtgttggggaggcagtgagagatcatgctgcggcagcgtcctccctctcccagaagaaa
gtcattgctgtgggcgtggccccctgggggatggtgcataacagagagcagctagttaat
gcacagggtagtttcccagcgaggtattatgtccagaacacgtcccgtgactcgtgctgc
ctggataataactaccaggccttcctgctggtggatgatggtagtgtaggccggcgggga
gaggaaacggccttcaggtccaagatggaagactacatctcccaccagcgcaccggcata
tggggtagtggcagtatagagatccctgtgctgtgtatgctcatctcaggggaagctgcc
atgctgaagagggtggatctctctctgaggaaggctactccctggctggtgttgaatggt
tctggtccagcggcagaccttatctgtgagctgctggatgccctgtcagatgtgcccatg
agctgcacctctcccccgccagagggtgaggggagcaagagccccagcgtggagctgcgc
gaaaggacccgtgagagggtcaggaggcacttccctgccgaggcagaccgggagaagctt
gtggacagggctctgagtatctatcagaacagagatctgatctcagtgttccacggggag
caggacagtcctgatgattttgacacagtgctactgaaggctctggtcagagccagtaaa
cgtgtgtccagcgatgccagtgagtacacagaggagctgaagcttgcagtagcctggaac
agggtggacatcgctaacagtgaactcttcaatggagacatccaatggaggtacgaggac
ctggaggactccatgacggatgccctgatcaacaacaagccccagtttgtacgtcttttc
aacgagaacggcctcaacatcctggactacctgaactaccagcgtctggagggcctgtac
cgctcgctgtccaacagctctctggcctacacgcttctccagcgacgcctcacagagagg
cagagcctggccagatccctgcccactgtcccctgctctccggacgagcccacgcccctc
aagagcccccagaatcctatgagccccatatcaggaccctcctctgccaaagagctcagc
ttgtatgaggtgtcacggttactatgggacatcctgggagatgtgtgtcagcccttctac
tacagtcctctgggtttggacaagcgcatcagcacctggagaacactgaagcaagtgaat
aagttgttgctgggggattgtccgtacagggagcagcgctgtgtgtatccctgggcctct
ctgtttatctgggctgtgctgcagaaccgcagcgagatggccatctacttctgggagatg
gcaggggagtctgtcctcagtgctctggcaggctgtaagattctgagggagctgtctaag
ctggagagtgagacggcggccaagctctctatgaaggagctagcacagaagtttgagaac
ttggcccatgatgtgttcagtgaatgctaccagagcagtgagagtcgctctttcaccctc
cttataaggcagtctccagtgtggggcgacgctacctgtctggagatggccaccgcagcc
gatgcccgcattttcttcagtcacgatggcttgcagtctctgctgtctcagatctggtgg
ggagacatggagaggagcacggaggtctggaaactgatcctcaccttcttcttacccccc
ctcatctacaccaacctcatcagctttagggaacctgaggaagaggggaagactgagcag
gtgtctcatggtgaagacacagacagtctggacggaggagatgccaccatgttctccctc
accgacatcatggatgaggatgctgaggaatatgctgctataagggtcaatctgaaaggt
gccccctcctccaatcctaagaggcccttcgtactgctgcgctggagggagttctggttc
gcgcccgtcaccgcgttcctaggcaacgtgctgatgtatttcctgttcctctgcctgttt
gctttcgtcctattgttagacttcaagcccccgccccctcatggcccgtccaccttagag
tttattctctacttctgggtcttcaccctggtctgtgaggagtttcgacagacgttcttc
aggggcagcactactttatatcagaggatgaagctctacatccaggacatgtggaataag
tgtgacatcacggccatctcactctttgcactgggcatgtgctgcagaatgttcccatgg
tcctatgagtttggccgggctgtgatggctgtggactacatggtgtttaccctccgtctc
atccacatattcgccatccacaaacagcttggacccaagatcatcatcgttgaaaaaatg
atgaaggatgtcttcttcttcctcttcttcctggcggtgtggctcatagcctacggcgta
gccaatcaggcgctgctctactcttacgatcctcgtcccggttggatctttcgccgagtg
ttctacaggccgtacctgcacatatttggacatatccccattcacgaaatggatgctgat
aaactggaggaggggatagagtgcaccaataacgtcaccctgatggaggcaggggcagag
ccctgcatgagtacctacgccaactggctggtggtcattttattggtcatcttcttgctg
gtcaccaacatcctcctggtcaacctgctcattgccatgttcagttacacgttctccaaa
gtgcaggagcacagtgacacctactggaagttccagcgctacaacttgatcacggagtac
cactctagaccctgtctggcaccacccttcatcatcctctcccacctccacctcttcatc
aagagacacatccgcaagatcccctccgtcaagatcaaacactttgttctggatatccgt
ggtaggcaggccagtagactgaacacatgggaggccatccagaaggagaatatactgtct
gcccagaacaaacgagagcgagagaaagagtcagagagactcaaacgcacctctgccaag
gtggacagcgtcctaaagcagatggtagagatccgggaccacggctgtaggatcaaaatg
ctggagacagagttggagtactgttctagtgccctctcctggatggtgcaggctctctct
cagagtaacttgataaagcccacatgtcctccgcccgctctccgagctgacccaagtgat
ggagaatag
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