Coregonus clupeaformis (lake whitefish): 121568637
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Entry
121568637 CDS
T08357
Name
(RefSeq) Hermansky-Pudlak syndrome 6 protein
KO
K20192
Hermansky-Pudlak syndrome 6 protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121568637
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
121568637
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HPS6_C
HPS6
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
121568637
NCBI-ProteinID:
XP_041734982
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All DBs
Position
1:complement(40758906..40765280)
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AA seq
948 aa
AA seq
DB search
MMQPMLEQVTDFGDFTRGTDLNEYLKQTYSNNRSCKNNLSDVRVSPDGCHIHVILRKPKV
GLMTFDKYQRPELIQSQKHLDLVLTRAVPIVDIVYFDGNNNNRDGGVPLLAVIFENGKAE
FWKFLELKGGWHHLHTAVLCNSPRAKVISVSASPNYIFWCEERPPSESSSPVNETHNFRY
CICKRTYEVEEMALSLGGVKIALHNNPRYNVISSGENVYLLPDLKDKSTMALSKFFLTWS
PQHDTFRVSSTCKGNLLRKDSPSTKESDFKRLVTDCTGYLSALSPPDIYGYSPTGSGGLL
LLLSTGWVSLLQKDGVLRQIYKLADNCLASSGAHNSLNVYQNTLALTIGWTLYLIDTTCG
VELEKIALKREGLLYGTEKQAPHLLLETGLFVVMLRERDPRGRDSDPKQKFPSLGTGESI
SPAALLVEAVFEEACKYYQQRSLSSARLTVEKLKRGGMFQAPISLANIIRDYLQSGGERG
MELPQGGGREGQEKLLGSLEAELKGLASLEEVKGGLVKERDVEDVCESLVQQEVGRLLLS
SELDRDSLLYLNSIFSQFPGQAWRATQSALQLRCNGEGSLSSKAPPEVWKTVLSPVQAPT
VTANLPYTNGSSQSKHKSPKPCPSTGSSFKLSPSLSSNPRPPATNSTLPVFELLCHSVFC
FQPSWLPRFLELAQQQQTSAGLGMGLGLGGSTWSYSGGRGSAENGESLPLYKRALSALPL
PGTGSDLKQDPDYEQNQDLEVDLLLVSGRPNAVLQALRILMGRQQWERVTQVAQRFCRQS
PLLNKEIFTTLLCEMAQHRDLDPYLDLLWALCPEDLTVTAILNILLKNIPSSSSSSLSPS
SNIPPSSPFADPQSRQLTFGLLKPLLSKVLQRETRPNQRYADILQSPSFPPPTPPRWAKG
LPRSTTDPSIGLDHNDIIGNTAAILDQHDPSKHRTVPGGRVTSPPNPD
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaccaatgttggaacaagtgacagatttcggggactttactagaggtacagat
ttaaacgaatatctaaaacagacgtattcaaataacagaagttgcaaaaacaatctatca
gatgtgcgcgtgagcccagatggatgccacattcatgtcattctccgcaaacccaaggtt
ggtctcatgacttttgacaaatatcagagaccagagctgatccagagccaaaagcaccta
gatttggtgctgactcgggctgtgcccattgtggatattgtatattttgacggcaacaac
aacaacagagacggcggtgttcctttgttagctgtcatattcgagaatggaaaagcagag
ttttggaaatttctggaactcaaagggggatggcatcacctgcacaccgcggtactctgc
aacagcccccgggctaaagtcatttctgtctcggccagtccgaactacatcttctggtgt
gaggagaggccaccgtcggagagctcatcacctgtcaacgagacccacaacttcaggtac
tgcatctgcaaacgaacctatgaggtggaggaaatggctctcagtttagggggcgtgaaa
attgctctgcacaacaacccccgctacaatgtcatcagctcaggtgagaatgtttaccta
ctacctgatttgaaagacaaatccaccatggctctctccaaattctttctcacgtggtcc
ccccagcatgacacattcagagtgagtagcacttgtaaaggtaatctcctccgaaaagac
tctccttctactaaagaatcagactttaagaggttggtaacagactgcacagggtaccta
tcagcccttagcccccctgatatctatggctactcccctactggcagtggaggcctgtta
ctactgctcagcacaggctgggtcagtctactacagaaggatggagtgttacgacagatc
tacaaactagctgacaactgcctggccagcagcggtgcccataacagcctgaacgtgtac
cagaacaccctggctctgaccatcggatggaccctctacctgattgacactacgtgtggc
gtggagctggagaagatagccctgaagagagaggggctactctacgggaccgagaagcag
gcaccacacctgctgttagagactggcctgtttgtggtgatgctccgggagagggacccc
cggggccgcgactccgacccaaagcagaagttcccgtccctgggtacaggggagagcatc
agccccgcggctctactggtagaggccgtgttcgaggaggcctgtaagtattaccaacag
agaagtctcagcagtgctcggctcactgtggagaagttaaagagaggagggatgttccag
gctcctatctctctggccaacatcatcagagactacctccagagcgggggggagagggga
atggagttaccccagggaggaggcagggaaggacaggagaagctgctcgggtccctggag
gctgaactgaaggggctggcctccctagaggaggtgaaggggggattggtgaaggagagg
gatgtggaggatgtgtgtgagagtctagtgcagcaggaggtggggagactcctcttgtcg
tcagagctcgaccgagactctctactctacctcaactccatcttcagccagttccccggt
caggcctggagggccacgcagagcgctctgcagctacgctgcaatggagagggctctctc
tcctctaaagcgcccccggaggtctggaagactgtcctcagccccgtacaggcccccact
gtcaccgcaaacctgccctataccaatggcagcagccagtctaaacataagtcacccaaa
ccttgccccagcactggctctagttttaaacttagccccagccttagctccaaccctaga
ccccctgccactaactcgaccctgcctgtcttcgagctcctgtgccactccgtcttctgc
ttccagcccagctggctgcccaggttcctggagctagcccagcagcagcagacctctgcg
ggcttggggatgggtctaggcctgggtggctccacctggagctactctggaggtagggga
tcagcggagaacggagagagcctacccctgtataaacgcgcactttcggctctgcctcta
cctggcaccggatcagacctgaaacaagacccagattatgaacaaaaccaggacttggag
gtggatcttctcctggtgagtggtagacccaacgcggtcctccaggctctgaggatcttg
atggggagacagcagtgggagagggtcacccaagtggcccagaggttctgcaggcagagt
cccttactgaacaaggagatctttactaccttactgtgtgagatggcccagcatcgagac
ctggatccatacctagacctcctctgggctctgtgtcctgaagatctcacggtcacggcc
atactcaacattttgctgaaaaatataccatcatcctcatcttcatccttatccccctcc
tcaaatatccctccctcctctccctttgctgacccccagtccaggcagttgacctttggg
ttgttgaagccgttgctcagtaaagttctacagagagagaccaggcccaaccagcggtat
gctgacatcctccagtcgccctcgttcccccctcccacgccccctcgctgggctaaagga
ctgcccagatccaccaccgatcctagcataggcttagatcacaatgatatcatcggcaac
acggcggccatcttggatcaacacgacccatctaaacacaggactgtccccgggggcagg
gtgacctcacctccgaaccccgactga
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