Coregonus clupeaformis (lake whitefish): 121569456
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Entry
121569456 CDS
T08357
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03272
Virion - Hepatitis viruses
cclu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
121569456
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121569456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121569456
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
121569456
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Psg1
Motif
Other DBs
NCBI-GeneID:
121569456
NCBI-ProteinID:
XP_045077203
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All DBs
Position
7:25337567..25347409
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AA seq
882 aa
AA seq
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MWRLLCVLLVFLACCFVQTNAETTCGTRQFLCGNGKCITLRWVCDDTDDCGDGTDELPGT
CLARTCRPTEFSCGGRLNQCVPSTWLCDGKADCENGADEESCAPKHCTDNEFRCSNGLCV
SASFVCDEELDCDDGSDEVSCPPATCSSTSFQCNNSVCVPRLWACDGDADCSDGSDEWPQ
NCGTRAPEGAAKPCSSQEFHCGSGECIHSSWKCDGGFDCLDRSDETNCSRLTCRPDEFQC
GDGTCIHGGRQCNRQYDCRDLSDEIGCVIVSHCKGPTRFKCRSGECISMEKVCDKQRDCR
DWSDEPLRECDSNECLYNNGGCSHICNDLKIGYECQCPTGYYLTDKKRCEDIDECASPDI
CSQICVNHMGSYKCECEEGYQVDPATKACKAIGTVAYLFFTNRHEVRKMTLDKSEYTRVI
PRLKNAVALDMNMVAKEIYWSDISQKKIYCTSMDLAADTAQHRVVIGSDIEAPEGIAFDW
VHGNIYWTDSIRSSISVSTANGSRRKTLFQNDLAKPRAIVVDPHSNFMYWTDWGTPAKIE
KGGLNGGDRAALVTDDIVWPNGITLDLLNQRLYWVDSKLHTLSSIDVQGGGRRTLIIDEH
RLAHPLGITVFEERVFWTDVSNNAILSANRVTGRDIKPVAEHLASPEDIVLYHNLKQPTG
RDWCKVANGGCEFMCLAAPQVGIHSPKYTCACPDNMLLAKDMRKCVPAAPTPAAPVKPNV
PATNPPPPPAPARTSPAPPARATTKAPIITTTVTPAPPRTTKPVPRNPQPAQPDRPRIPQ
AHTTTVPQVTTQDIRHEFSALPTVPSTPAALYIALPIAIVCLVAFGAVLLWRNYRLKNTN
TIHFENPVYQKTTEDQVHICRSHSPDGYSYPPRQIVSLDDEA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctgctgtgcgtgctgttggtgttcctggcttgctgttttgtccaaacaaac
gcagagacaacatgcgggaccaggcagttcctgtgtgggaacgggaagtgcattacattg
agatgggtgtgtgacgacacagatgactgtggagatggcactgacgagctccccggaacc
tgcttggccagaacttgcagacccacagagtttagctgtggtggccgtctgaaccagtgt
gttcccagtacctggctctgtgacggcaaagcagactgtgagaatggtgctgatgaggaa
agctgtgcgcccaagcactgcacagataacgagttccgctgcagtaacggcctgtgtgtt
tcggcctcctttgtgtgtgatgaggagttggactgtgatgatgggagcgacgaggtttcc
tgcccacccgccacctgtagctccacctccttccagtgcaacaactctgtgtgtgtgccg
cgcctgtgggcctgcgacggagacgccgactgctcggatggctccgacgagtggccacag
aactgtgggacgcgggcccctgagggtgccgccaagccctgctcctctcaggagttccac
tgtggcagcggggagtgtatccacagcagctggaaatgtgacggagggttcgactgcctg
gatcgctctgacgagaccaactgtagccgcctcacctgccgccccgatgagttccaatgt
ggtgatggcacctgtatccacggcggccgccaatgtaaccgccagtacgactgcagagac
ttgagtgacgaaataggctgtgtcattgtgagccattgcaagggccccaccaggtttaag
tgccgtagtggggagtgcatcagcatggagaaggtgtgtgacaagcagcgcgactgcagg
gactggtcagatgagcctctcagagagtgtgactccaacgagtgcctgtacaacaatggc
ggctgctcacacatctgcaatgacctgaagatcggctatgagtgccaatgccccaccggt
tactacctgacggacaagaaacgctgtgaagatatcgatgagtgtgccagcccagacatc
tgcagccagatctgtgtcaatcacatgggcagctacaagtgcgaatgtgaggagggctac
caggtcgacccagccaccaaagcctgcaaggccatcggcactgtagcctatctgttcttc
accaatcgccatgaggtgaggaagatgacactggacaagagtgagtacacccgtgtcatc
ccccgcctgaagaacgcagtggctctggacatgaacatggttgccaaggagatttactgg
tctgacatctcccagaagaagatctactgcacctccatggacttggctgcagacacagct
cagcacagagttgtgattggcagcgacatcgaggctcctgaaggcatcgcctttgactgg
gtccacggcaacatctactggaccgacagtatccgcagcagcatctctgtgtcaaccgcc
aatgggagccgccgcaagactctcttccagaatgacctggccaagccccgcgctatcgtg
gtcgacccccacagcaacttcatgtactggactgactggggaactccagccaagattgag
aagggaggtctgaacggaggagaccgtgctgctctggtcacagacgacattgtgtggccc
aatggaatcacccttgacctgctgaaccagcggctgtactgggtggactccaagctgcac
accctctccagtattgacgtccagggtggcggccgaaggacactcattatagatgaacac
aggctagcccatcccctaggcatcactgtgtttgaggaaagagtgttttggacagatgtc
agcaataatgccattctgagtgccaaccgtgtgacgggcagggacatcaagcctgtggca
gagcacctggcatccccagaggacattgtgttgtaccacaacctcaaacagccaactggc
agggactggtgcaaggtggccaacggaggctgtgagttcatgtgtctggcagccccccag
gtgggcatacattcccccaagtacacctgtgcatgccctgacaacatgctgctggccaaa
gacatgaggaaatgtgtaccagctgcaccaacacctgcagctccagtcaagcccaatgtt
cccgccaccaaccccccacccccaccggcacccgcccgcacctcccctgcacctccagcc
cgtgccaccactaaggcccccatcatcactaccacagttacacctgcacctccccgcact
accaagcctgtgccacgcaacccccagcctgcccagccagatagacccaggatcccccag
gcccatactaccactgtgcctcaagttaccactcaggacatccgccatgaattttctgct
ctacccacagtcccttcaacccctgcagctttatacatcgcactgcctatagccattgtg
tgtctggtggcctttggtgccgtgctgctgtggaggaactacaggctgaagaacactaac
accattcactttgaaaacccagtctaccagaagaccactgaagaccaggtgcacatatgc
aggagccacagtccagatggctactcctacccaccgagacagattgtgagtcttgatgat
gaggcttga
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